We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VO7 | 2017 | 0 |
| 5VPS | 2017 | 0 |
| 8SLH | 2023 | 0 |
| 8SNG | 2023 | 0 |
| 8SNJ | 2023 | 0 |
| 8SOY | 2023 | 0 |
| 8SQO | 2023 | 0 |
| 8SQP | 2023 | 0 |
| 6ANZ | 2017 | 0 |
| 6AP5 | 2017 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3kzx | - | https://static-content.springer.com/esm/art%3A10.1186%2Fs12859-015-0758-y/MediaO... | Multi-Scale Investigation of Protein-Protein Interactions | 2017 | Q Hou - 2017 - dare.ubvu.vu.nl | ... The protein structure on the back cover is PDB 3E8L. ... Sequence level Although an increasing number of protein structures have become available, there is still a lack of structural data for most protein sequences, which is called the 'sequence- structure gap' [Rost and Sander ... |
| 2 | 3kzx | - | http://www.biomedcentral.com/1471-2105/16/325/ | Sequence specificity between interacting and non-interacting homologs identifies interface residuesa homodimer and monomer use case | 2015 | Q Hou, BE Dutilh, MA Huynen, J Heringa - BMC , 2015 - biomedcentral.com | ... all 11 monomeric C1-type HAD Hydrolase group (2NYV, 2HSZ, 2HI0, 2AH5, 4EX6, 3MC1, 3D6J,3KBB, 3KZX, 2HDO, 3SD7). ... 6 shows the interface and predicted interface sites in the structure. ...a Secondary stucture of two chains of PDB 3QGM (chain C and D). The interface is in ... |
| 3 | 3hzg | - | https://www.nature.com/articles/s42003-023-05227-w | Biosynthesis of ansamitocin P-3 incurs stress on the producing strain Actinosynnema pretiosum at multiple targets | 2023 | Q Huang, X Zhang, Z Guo, X Fu, Y Zhao- Communications, 2023 - nature.com | FDTS and dTGD were aligned to 3hzg and 1r66, which form a homo-tetramer and homo- The molecular structure of AP-3 was obtained from the PDB database ( PDB ID: 7e4p). |
| 4 | 3ecd | - | http://www.uib.no/People/nmaxt/papers/pan1.pdf | Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method | 2009 | Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no | ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ... |
| 5 | 5vbf | - | https://www.biorxiv.org/content/10.1101/2021.07.15.452591.abstract | The tetrameric assembly of 2-aminomuconic acid dehydrogenase is a functional requirement of cofactor NAD+ binding | 2021 | Q Shi, Y Chen, X Li, H Dong, C Chen, Z Zhong, C Yang- bioRxiv, 2021 - biorxiv.org | 144 The overall structure of AmnC protomers shares the general architecture of the ALDH 145 family (SSADH) ( PDB code:2W8P)(23-26). Pairwise superposition of the six protomers yielded 164 In this study, we elucidated the structure of AmnC and how it 260 |
| 6 | 4w65 | - | https://www.mdpi.com/1420-3049/23/7/1555 | Isolation of -1, 3-Glucanase-Producing Microorganisms from Poria cocos Cultivation Soil via Molecular Biology | 2018 | Q Wu, X Dou, Q Wang, Z Guan, Y Cai, X Liao- Molecules, 2018 - mdpi.com | The glycoside hydrolase -1,3-glucanase, extensively distributed among plants, fungi, and bacteria, acts on 1,3--glucosidic bonds of structural -1,3-glucans to hydrolyze or transfer glycosides [1,2]. Based on the hydrolysis position, -1,3-glucanases are divided into endo-type |
| 7 | 5k85 | 5ifi | https://www.nature.com/articles/s41467-020-14301-4 | ProtCID: A data resource for structural information on protein interactions | 2020 | Q Xu, RL Dunbrack- Nature communications, 2020 - nature.com | While the structure of full-length activated PAH has not been determined, a recent structure of the ACT domain of J9VFT1_CRYNH, E5XP76_9ACTN) and two common entries ( PDB : 5IFI [https://doi.org/10.2210/pdb5IFI/ pdb ] and 5K85 [https://doi.org/10.2210/pdb5K85/ pdb ]) |
| 8 | 3ezn | - | http://www.jbc.org/content/289/31/21242.short | Mechanism of Dephosphorylation of Glucosyl-3-phosphoglycerate by a Histidine Phosphatase | 2014 | Q Zheng, D Jiang, W Zhang, Q Zhang, Q Zhao - Journal of Biological Chemistry, 2014 - ASBMB | ... 2B). Other significant structural matches included phosphoserine phosphatase 1 (34) (PsP1; Protein Data Bank code 4IJ5) and phosphoglycerate mutase (35) (PGM; Protein Data Bank code 3EZN). ... PDB, Protein Data Bank. ... |
| 9 | 4g7f | - | http://pubs.rsc.org/-/content/articlehtml/2017/mb/c7mb00252a | Insights into the Giardia intestinalis enolase and human plasminogen interaction | 2017 | R Aguayo-Ortiz, P Meza-Cervantez, R Castillo- Molecular, 2017 - pubs.rsc.org | ... P-BLAST analysis showed that T. brucei brucei ( PDB ID: 2PU1) and T. cruzi ( PDB ID: 4G7F ) exhibited the highest ... (B) Sequence alignment of the proposed HsPLG binding sites (highlighted in orange boxes) in the different organisms, (C) 3D structure superposition and ... |
| 10 | 3dah | - | http://escholarship.org/uc/item/29g595sg.pdf | Modeling of Protein Flexibility and Inter-Molecular Interactions: Applications to Computer-Aided Drug Design and Discovery | 2012 | R Ai - 2012 - escholarship.org | ... Page 22. xxi Figure 5.1 .95 Summary of ligand binding capacity and subdomains of HSA using PDB structure 1E7E. Long-chain fatty acids are depicted in VDW representation using VMD 1.8.7. ... |