We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3OQ8 | 2010 | 6 |
| 3OMF | 2010 | 2 |
| 3OL3 | 2010 | 4 |
| 3OKS | 2010 | 4 |
| 3OJ7 | 2010 | 4 |
| 3OJ6 | 2010 | 2 |
| 3OIB | 2010 | 6 |
| 3OI9 | 2010 | 1 |
| 3OEC | 2010 | 3 |
| 3OCF | 2010 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3mqd | - | https://ir.library.oregonstate.edu/downloads/4t64gt04f | Exploring Protein Structure: Seeing the Forest and the Trees. | 2017 | AE Brereton - 2017 - ir.library.oregonstate.edu | Experimental Methods to Obtain Structures Only a few experimental methods exist that can yield enough information to accurately determine the 3-dimensional structure of a folded protein complete structural information often comes from using a combination of the methods |
| 2 | 3mpd | 3ndo, 3r8c, 3ngf, 3tcr, 3s4k, 3te8, 3r1j, 3qiv, 3sp1, 3qat, 3tcv, 3pm6, 3tsm, 4dhk, 4dyw, 4eg0, 3urr, 4i1u, 4f4f, 4je1, 4f3y, 4f82, 4lw8, 4pq9, 4q6u, 4ony, 4ose, 4kyx, 4o3v, 4pfz, 4qji, 4oo0, 4q14, 4oh7, 4wso, 3ol3 | http://210.212.192.152:8080/jspui/handle/123456789/466 | Statistical Potentials for Prediction of Protein-Protein Interactions | 2015 | A Dhawanjewar - 2015 - 210.212.192.152 | ... protein complexes by reducing the kinetic costs associated with structural rearrangements atthe protein 3 Page 13. Introduction binding sites (Rajamani et al., 2004). ... structure. Around 89 %of structures in the PDB are determined using X-ray Crystallography. How- ... |
| 3 | 3moy | - | http://onlinelibrary.wiley.com/doi/10.1002/jcc.21900/full | Fast and accurate computation schemes for evaluating vibrational entropy of proteins | 2011 | B Xu, H Shen, X Zhu, G Li - Journal of computational chemistry, 2011 - Wiley Online Library | ... PDB id, Protein length, Standard NMA (kcal mol ?1 K ?1 ), Scaled BNM (kcal mol ?1 K ?1 ), Scaled GNM (kcal mol ?1 K ?1 ), Scaled ANM (kcal mol ?1 K ?1 ). 1al3, 324, 8.462, 8.405, 8.466, 8.818. ... 3m73, 314, 10.930, 10.912, 11.027, 10.248. 3moy, 263, 9.020, 9.108, 9.183, 9.171. ... |
| 4 | 3mmt | - | https://chemrxiv.org/ndownloader/files/24733793 | The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis | 2020 | M Sharma, P Abayakoon, Y Jin, R Epa, JP Lingford - 2020 - chemrxiv.org | Figure S15. Closed conformations of PfkB, TPK and SF kinases indicate close structural rela- tionship EcYihVADPMgSF structure reveals KRN sulfonate recognition triad in YihV A, FBPA from Bartonella henselae forms homotetramers ( 3MMT . pdb ),{, 2011 #8494} FBPA from |
| 5 | 3mmt | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0156105 | X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism | 2016 | LA Dadinova, EV Shtykova, PV Konarev, EV Rodina - PloS one, 2016 - journals.plos.org | ... When comparing the predicted structure of FbaB to ten of the closest structural analogs in the PDB, three fructose bisphosphate aldolase homologues were identified (PDB: 1OK6, 3MMT, 3BV4) along with four tagatose bisphosphate aldolases ... |
| 6 | 3mmt | - | http://www.sciencedirect.com/science/article/pii/S2352340916304905 | Interaction network and mass spectrometry data of Xanthomonas citri subsp. citri surface proteins from differential proteomic analysis of infectious and non- | 2016 | CM Carnielli, J Artier, JCF de Oliveira - Data in Brief, 2016 - Elsevier | ... ID, Gene symbol, ENSEMBL, SWISS-PROT, Protein structure (PDB), Conserved domain (CDD),Gene ontology (GO). ... GO:0003735 structural constituent of ribosome, ... citri (strain 306) GN=XAC3344PE=3 SV=1, 3mmt Fructose-bisphosphate aldolase, cd00948, FBP_aldolase_I_a ... |
| 7 | 3mmt | - | http://link.springer.com/article/10.1007/s11084-013-9331-8 | Uniquely Localized Intra-Molecular Amino Acid Concentrations at the Glycolytic Enzyme Catalytic/Active Centers of Archaea, Bacteria and Eukaryota are Associated with Their Proposed Temporal Appearances on Earth | 2013 | JD Pollack, D Gerard, DK Pearl - Origins of Life and Evolution of Biospheres, 2013 - Springer | ... We thank A. S. Gardberg, Emerald BioStructures, Seattle, WA for advice concerning the composition of the C/AC of PDB 3mmt FBPA of Bartonella henselae. ... |
| 8 | 3mmt | - | https://www.sciencedirect.com/science/article/pii/S2352340916304905 | Interaction network and mass spectrometry data of Xanthomonas citri subsp. citri surface proteins from differential proteomic analysis of infectious and non | 2016 | CM Carnielli, J Artier, JCF de Oliveira- Data in brief, 2016 - Elsevier | ID, Gene symbol, ENSEMBL, SWISS-PROT, Protein structure ( PDB ), Conserved domain (CDD), Gene ontology (GO) GO:0003735 structural constituent of ribosome citri (strain 306) GN=XAC3344 PE=3 SV=1, 3mmt Fructose-bisphosphate aldolase, cd00948, FBP_aldolase_I_a |
| 9 | 3meq | - | https://www.frontiersin.org/articles/10.3389/fmicb.2017.00944 | Adaptations to high salt in a halophilic protist: differential expression and gene acquisitions through duplications and gene transfers | 2017 | T Harding, AJ Roger, AGB Simpson- Frontiers in microbiology, 2017 - frontiersin.org | WP_041596283.1), and sequences for characterized NADPH-dependent enzymes from S. cerevisiae (1Q1N), P. perezi (1P0C), Helicobacter pylori (3TWO), Populus tremuloides (1YQD) and Catharanthus roseus (5H81), and for NADH-dependent enzymes from Moraxella sp. (4Z6K), Geobacillus stearothermophilus (3PII), Ralstonia eutropha (3S1L), Brucella suis (3MEQ), and Pseudomonas aeruginosa (1LLU). (B) Maximum-likelihood phylogenetic tree for zinc-dependent alcohol dehydrogenase showing strongly supported clustering (gray |
| 10 | 3meq | - | http://d-nb.info/1035623692/34 | Reaction and protein engineering employing a carbonyl reductase from candida parapsilosis | 2012 | A Jakoblinnert, UDMB Ansorge-Schumacher - 2012 - d-nb.info | ... Four X-ray templates were selected for modeling the CPCR1 structure (349aa): Yeast ADH I from S. cerevisiae with bound trifluorethanol (347 residues with quality score 0.522, PDB ID 2HCY), ADH from Brucella melitensis (341 residues with quality score 0.590, PDB ID 3MEQ), ... |