We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6CXM | 2018 | 0 |
| 6CY5 | 2018 | 0 |
| 6EEP | 2018 | 0 |
| 6EFW | 2018 | 0 |
| 6EFX | 2018 | 0 |
| 6MDY | 2018 | 0 |
| 6MFU | 2018 | 0 |
| 6MJK | 2018 | 0 |
| 5SCT | 2022 | 0 |
| 3UK2 | 2011 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ftp | 3f9i, 3grp | http://jb.asm.org/content/198/3/463.short | Dissecting the structural elements for the activation of -ketoacyl-(acyl carrier protein) reductase from Vibrio cholerae | 2016 | J Hou, H Zheng, M Chruszcz - Journal of , 2016 - Am Soc Microbiol | ... All enzymes in the active state (shown in gray with PDB accession numbers 1Q7B, 1UZN, 2C07, 2P68, 2UVD, 3FTP, 3LYL, 3OP4, 3RRO, 3OSU, and 4AFN) share the same open conformation in the cofactor binding site, while all the enzymes in the inactive state (shown in blue with PDB accession numbers 1I01, 1UZL, 2NTN, 3F9I, 3GRP, and 3TZC) have disordered ... |
| 2 | 3ue9 | - | http://scholar.google.com/https://espace.library.uq.edu.au/view/UQ:409815/s41770... | Disruption of de novo ATP biosynthesis abolishes virulence in Cryptococcus neoformans | 2016 | R Blundell - 2016 - espace.library.uq.edu.au | ... pioneered the concept of rational drug design (28) which involves the use of metabolic, genetica nd structural studies to identify potential targets, followed by the directed search ... AdSS has been purified and characterized from several sources ... Crystal structures are also available for the proteins from Homo sapiens (54%, PDB ID: 2V40); Mus musculus (54%, (50, 99)) ... and Burkholderia thailandensis (40%, PDB ID: 3UE9);. ... |
| 3 | 4gri | 4g6z | http://www.bioscirep.org/content/35/2/e00184.abstract | Dispensability of zinc and the putative zinc-binding domain in bacterial glutamyl-tRNA synthetase | 2015 | N Chongdar, S Dasgupta, AB Datta, G Basu - Bioscience reports, 2015 - bioscirep.org | ... From extensive structural and sequence analyses from whole genome database of bacterialGluRS, we further show that in addition to many bacterial GluRS lacking a zinc-binding motif,the pZBD is actually deleted in some bacteria, all containing either glutaminyl-tRNA ... |
| 4 | 6c9c | - | https://www.biorxiv.org/content/10.1101/863571v1.abstract | Disorder and interfaces in proteins are two sides of the same coin | 2019 | B Seoane, A Carbone- bioRxiv, 2019 - biorxiv.org | c. Analysis of cluster 6c9c A ( PDB IDs for the structures are given in SI section S2). In the external wheel, we show one unbound structure and the chain structures containing the 12 different interfaces of this cluster: DRs in orange and IRs in blue |
| 5 | 6n41 | - | https://bibliotecadigital.exactas.uba.ar/download/tesis/tesis_n7210_SosaHolt.pdf | Diseo, desarrollo y caracterizacin bioqumica y funcional de nanoanticuerpos VHH monovalentes dirigidos contra las protenas del virus de influenza tipo A | 2022 | CSS Holt - bibliotecadigital.exactas.uba.ar | El virus de la Influenza tipo A contina siendo responsable de brotes y epidemias, adems de pandemias con graves consecuencias para la salud humana. Los virus tipo H1N1 y ... En ambos casos el templado con mayor posición en ranking fue el PDB 6N41(A/Netherlands/002P1/1951 (H1N1)) dado su alta identidad de secuencia |
| 6 | 6nb3 | - | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.1c00263 | Discovery of Small Molecule Entry Inhibitors Targeting the Fusion Peptide of SARS-CoV-2 Spike Protein | 2021 | X Hu, CZ Chen, M Xu, Z Hu, H Guo, Z Itkin- ACS Medicinal, 2021 - ACS Publications | SARS-CoV-2 entry into host cells relies on the spike (S) protein binding to the human ACE2 receptor. In this study, we investigated the structural dynamics of the viral S protein at the fusion pept... Comparison of the FP binding pocket of the spike protein of SARS-CoV-2 (PDB 6XR8), SARS-CoV-1 (PDB 5WRG), and MERS (PDB 6NB3). The spike protein is rendered in ribbons with the FP colored in magenta and the HR1 domain in blue. |
| 7 | 4mow | - | https://pubs.acs.org/doi/abs/10.1021/acscentsci.1c00519 | Discovery of SARS-CoV-2 Papain-like Protease Inhibitors through a Combination of High-Throughput Screening and a FlipGFP-Based Reporter Assay | 2021 | C Ma, MD Sacco, Z Xia, G Lambrinidis- ACS Central, 2021 - ACS Publications | Using the structure with PDB ID 7JRN as a template, we docked the potent analogues Jun9-53-2, Jun9-72-2, and Jun9-75-4 in the SARS-CoV-2 PL pro drug-binding site. The stability of |
| 8 | 5vwm | - | https://pubs.acs.org/doi/abs/10.1021/acs.jmedchem.9b01604 | Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria | 2019 | JP Surivet, P Panchaud, JL Specklin- Journal of Medicinal, 2019 - ACS Publications | UDP-3-O-((R)-3-hydroxymyristoyl)-N-glucosamine deacetylase (LpxC) is as an attractive target for the discovery and development of novel antibacterial drugs to address the critical medical need crea... |
| 9 | 4fkx | - | http://link.springer.com/article/10.1007/s10822-017-0022-9 | Discovery of novel inhibitors for Leishmania nucleoside diphosphatase kinase (NDK) based on its structural and functional characterization | 2017 | AK Mishra, N Singh, P Agnihotri, S Mishra - Journal of Computer- , 2017 - Springer | ... novel LaNDK inhibitors, the crystal structure of Leishmania major NDKb in complex with ADP(PDB ID: 3NGU ... three fold virtual screening uti- lizing Surflex-dock, GeomX and Flex-X, as ourstructure lacks the ... TbNDK (4FKX) 32,672 14,027 20,443 3566 32.7 6.6 Hexamer Dimer ... |
| 10 | 5tw7 | - | https://www.mdpi.com/2079-7737/10/7/594 | Discovery of Novel GMPS Inhibitors of Candidatus Liberibacter Asiaticus by Structure Based Design and Enzyme Kinetic | 2021 | J Nan, S Zhang, P Zhan, L Jiang- Biology, 2021 - mdpi.com | SwissModel was employed to generate the three-dimensional structure of CLas GMPS using Neisseria gonorrhoeae GMPS ( PDB ID: 5TW7 ) as a The homology model of the CLas GMPS structure was a dimer (Figure 1). The quality of the three-dimensional structure of CLas |