Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
4J3G	2013	2
4J07	2013	5
4IZO	2013	1
4IZ9	2013	1
4IYQ	2013	4
4IXO	2013	3
4IX8	2014	19
4IWH	2013	2
4IV6	2013	1
4IV5	2013	4

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	3o2e	-	https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15447	Phosphorylation status of BolA affects its role in transcription and biofilm development	2021	L Galego, S Barahona, CV Romo- The FEBS, 2021 - Wiley Online Library	NMR structure of mouse BolA1 ( PDB ID 1V60) and E. coli BolA ( PDB ID 2DHM) reveal a structure with similarity to nucleic acid binding proteins including a helix-turn [6]. MreB is a structural homologue of actin that is essential for cell elongation, maintenance of
2	3o0m	-	https://edoc.ub.uni-muenchen.de/21623/	Evolutionary coupling methods in de novo protein structure prediction	2016	S Seemayer - 2016 - edoc.ub.uni-muenchen.de	On homomeric proteins, intermolecular couplings (red) have to be disentangled from intramolecular couplings (yellow) for de novo structure prediction to succeed (representative contacts mapped on PDB code 3O0M)
3	3o0m	4lsm	https://link.springer.com/content/pdf/10.1038/srep13652.pdf	Dimeric interactions and complex formation using direct coevolutionary couplings	2015	RN Dos Santos, F Morcos, B Jana, AD Andricopulo- Scientific reports, 2015 - Springer	Structural Modeling. All the homodimers used in this study were retrieved from Protein Data Bank ( PDB )60. The PDB accession code for each structure is shown in Table 1. ... Histidine triad protein 3O0M 149 ... GAPDH 4LSM 346 Gp_dh_N
4	3o0m	3oj7	https://papers.ssrn.com/sol3/papers.cfm?abstract_id=5273447	Biochemical and Biophysical Characterization, and 3d Structure Modeling of Human Hint3, a Hydrolase of the Hit Superfamily	2025	R Dolot, M Sirerant, A Mikoajczyk- Available at SSRN - papers.ssrn.com	Structure modelling of the HINT3 (Gly36) variant revealed that the enzyme exists mainly in absent in the structures of HINT1 and HINT2. Analysis of the HINT3 structure shows that there... In a first attempt, a homology model for HINT3 was generated based on eight crystallographic structures with the PDB IDs: 5UVM, 6D6J, 6CVS, 3OJ7, 3O0M, 4INC, 3TW2, and 3O1Z (see Table S2) using the MODELLER 10.5 software.
5	3o0m	-	http://jb.asm.org/content/early/2017/06/14/JB.00304-17.abstract	The DNA repair repertoire of Mycobacterium smegmatis FenA includes the incision of DNA 5'flaps and the removal of 5'adenylylated products of aborted nick ligation	2017	ML Uson, S Ghosh, S Shuman- Journal of bacteriology, 2017 - Am Soc Microbiol	MSMEG_5871 (Rv0759c) has not been characterized. MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted.
6	3o0m	-	http://search.proquest.com/openview/769ccf38b4f4380a7bc1930f51547727/1?pq-origsi...	Characterization of Mycobacterial Flap Endonuclease FenA and RNA Helicase HelY	2018	MLL Uson - 2018 - search.proquest.com	There, she focused on the detection of circulating tumor cells and structural characterization of EphA3, a 122 Figure 4.3 Manganese ions in the FenA active site ..... 126 Figure 4.4 Active site architecture and structure -guided mutagenesis
7	3o0m	3r6f, 3oj7, 3lb5	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354057/	Crystal Structure of Histidine Triad Nucleotide-Binding Protein from the Pathogenic Fungus Candida albicans	2019	A Jung, JS Yun, S Kim, SR Kim, M Shin- Molecules and, 2019 - ncbi.nlm.nih.gov	3. The most similar structure was HINT from the protozoal species Leishmania major (LmHINT); the Z-score was 18.8, and the rmsd Species b, C-terminal region, Z-score, RMSD (), Identity (%), C, PDB code, NCBI ID M. smegmatis, II, 14.9, 3.6, 29, 110, 3O0M , WP_011730267.1
8	3o0m	-	http://www.sciencedirect.com/science/article/pii/S002228361100492X	Structural Insights into the Novel Diadenosine 5′,5‴-P1,P4-Tetraphosphate Phosphorylase from Mycobacterium tuberculosis H37Rv	2011	S Mori, K Shibayama, JI Wachino, Y Arakawa - Journal of Molecular Biology, 2011 - Elsevier	... Homo sapiens fragile HIT protein [Fhit; Protein Data Bank (PDB) IDs: 6FIT and 1FHI; Z-score = 16.1 and 15.8, respectively], which is a HIT family Ap n A hydrolase; [11] and [12] Zn-bound HIT family protein from Mycobacterium smegmatis (MSMEG5028; PDB ID: 3O0M; Z-score ...
9	3o0m	3oj7, 3r6f, 3lb5	https://udspace.udel.edu/items/40e2c554-f9dc-43a9-bb93-b6dd5914e73c	Potential Binding Partners of cADPR and cADPR isomers in the Thoeris Phage Defense System	2023	N Bomasamudram - 2023 - udspace.udel.edu	structures , and they differ based on their Cterminus. The structures of categorized Hint structures hydrocarbonoclasticus (3OHE), and Mycolicibacterium smegmatis ( 3O0M ). Type III Hint
10	3o0m	-	http://jb.asm.org/content/199/17/e00304-17.short	The DNA Repair Repertoire of Mycobacterium smegmatis FenA Includes the Incision of DNA 5 Flaps and the Removal of 5 Adenylylated Products of Aborted Nick	2017	ML Uson, S Ghosh, S Shuman - Journal of bacteriology, 2017 - Am Soc Microbiol	... IMPORTANCE Structure -specific DNA endonucleases are implicated in bacterial DNA replication, repair, and recombination, yet there is scant knowledge ... We discuss the properties of mycobacterial FenA in light of insightful structural studies of eukaryal flap endonucleases (11 ... MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted.