We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6N0U | 2018 | 0 |
| 6N0W | 2018 | 0 |
| 6N1M | 2018 | 0 |
| 6NB0 | 2018 | 0 |
| 6NB2 | 2019 | 0 |
| 3TZU | 2011 | 0 |
| 6NBM | 2019 | 0 |
| 6NDR | 2018 | 0 |
| 6NHI | 2019 | 0 |
| 6NRZ | 2019 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4xgi | - | http://onlinelibrary.wiley.com/doi/10.1002/biot.201700305/full | Discovery of a Potentially New Subfamily of ELFV Dehydrogenases Effective for lArginine Deamination by Enzyme Mining | 2017 | W Wu, Y Zhang, J Huang, Y Wu, D Liu- Biotechnology, 2017 - Wiley Online Library | Active site of glutamate dehydrogenase ( PDB 4XGI ) (A), phenylalanine dehydrogenase ( PDB 1BW9) (B), valine dehydrogenase ( PDB 1LEH) (C Phenylalanine was inserted into the active site of valine dehydrogenase (C) by structure alignment of 1BW9 and |
| 2 | 4qtp | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Discovery of antigens for early detection of Mycobacterium avium subsp. paratuberculosis and analysis of characteristics using bioinformatics tools. | 2015 | HT Park, HE Park, MK Shin, YI Cho - Korean Journal of , 2015 - search.ebscohost.com | ... MAP MAP0380 coding anti-sigma factor antagonist protein(PDB ID: 4qtp,TM-score ... 1. Three-dimensional structure prediction using I-TASSER server. ... MAP1204p60 domain (PDB ID: 3i86, TM-score: 0.547), sequence identity 100 ... |
| 3 | 3ftp | - | http://pubs.acs.org/doi/abs/10.1021/bi3015554 | Discovery of an L-Fucono-1, 5-Lactonase from cog3618 of the Amidohydrolase Superfamily | 2012 | ME Hobbs, MW Vetting, HJ Williams? - Biochemistry, 2013 - ACS Publications | ... monomeric ensemble model generated by an overlay of the structures represented by PDB IDs Page 10 of 56 ACS Paragon Plus Environment ... Initial phases for unliganded BmulJ_04919 were determined by MR using MOLREP and a tetrameric search model (3FTP) (22). ... |
| 4 | 3mx6 | - | https://www.sciencedirect.com/science/article/pii/S0141813019301175 | Discovery of a new class of type 1 methionine aminopeptidases that have relaxed substrate specificity | 2019 | SC Bala, N Haque, V Pillalamarri, R Reddi- International journal of, 2019 - Elsevier | 3MX6 , R. prowazekii, 99% (C), 1% (L) Based on this analysis, MetAP1n has different active site architecture and hence has a substrate preference for leucine in addition 3c. Column 2 describes the result analysis of the HSSP file associated with EcMetAP1a structure ( PDB : 1C21 |
| 5 | 3u0g | 4m0j, 4tvi | https://www.nature.com/articles/srep38183 | Discovery and structural characterisation of new fold type IV-transaminases exemplify the diversity of this enzyme fold | 2016 | T Pavkov-Keller, GA Strohmeier, M Diepold- Scientific reports, 2016 - nature.com | from Mycobacterium smegmatis 48 , 3UYY from Deionococcus radiodurans 49 , 3U0G from Burkholderia Crystallographic data processing and structure refinement statistics are presented in Table 4 confirmed function are D-amino acid aminotransferases (eg PDB -code: 1DAA |
| 6 | 6c9e | - | https://www.biorxiv.org/content/10.1101/2020.05.24.113720v1.abstract | Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism | 2020 | RJ Nichols, B LaFrance, NR Phillips, LM Oltrogge- bioRxiv, 2020 - biorxiv.org | additional density for the holo-SrpI with a 243 homologous cysteine desulfurase dimer docked in ( pdb : 6c9e ) the first Family 2 encapsulin structure and is 267 the highest resolution structure for an Given the structural 271 similarity of the entire shell, it is unsurprising that the SrpI |
| 7 | 3tsc | 3sx2, 4rgb, 3uve, 5ej2, 3t7c, 3pxx, 3s55 | https://d-nb.info/125273736X/34 | Discovery and biosynthesis of the redox cofactor mycofactocin | 2021 | LA Pea Ortiz - d-nb.info | scale that will advance our research on the three-dimensional structure and the enzymology PDB ID NA when not reported as crystalized. * means enzymatic activity studies performed |
| 8 | 4jpd | - | https://ri.conicet.gov.ar/handle/11336/83435 | Dinmica molecular y consolidacin estructural de la frataxina humana | 2016 | SE Faraj - 2016 - ri.conicet.gov.ar | The Alteration of the C-terminal Region of Human Frataxin Distorts its Structural Dynamics and Function Abajo: estructura de las protenas NB7804A de Bacillus halodurans ( PDB ID: 2KL4, amarillo); CyaY de Burkholderia cenocepacia ( PDB ID: 4JPD , gris), CyaY de |
| 9 | 3vab | - | http://www.jbc.org/content/291/18/9785.short | Dimerization of Bacterial Diaminopimelate Decarboxylase Is Essential for Catalysis | 2016 | MG Peverelli, TPS da Costa, N Kirby - Journal of Biological , 2016 - ASBMB | ... and 1TUF) (9), Aquifex aeolicus (PDB code 2P3E), and Brucella melitensis (PDB code 3VAB)show that ... both a dimer (PDB codes 1HKW and 1HKV) (7) and a tetramer (PDB code 2O0T ... arethe results of earlier studies aimed at characterizing the quaternary structure of DAPDC ... |
| 10 | 3o0m | 4lsm | https://link.springer.com/content/pdf/10.1038/srep13652.pdf | Dimeric interactions and complex formation using direct coevolutionary couplings | 2015 | RN Dos Santos, F Morcos, B Jana, AD Andricopulo- Scientific reports, 2015 - Springer | Structural Modeling. All the homodimers used in this study were retrieved from Protein Data Bank ( PDB )60. The PDB accession code for each structure is shown in Table 1. ... Histidine triad protein 3O0M 149 ... GAPDH 4LSM 346 Gp_dh_N |