We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3N7T | 2010 | 0 |
| 3N5O | 2010 | 4 |
| 3N58 | 2010 | 10 |
| 3MYB | 2010 | 4 |
| 3MXU | 2010 | 1 |
| 3MX6 | 2010 | 9 |
| 3MR1 | 2010 | 3 |
| 3MQW | 2010 | 4 |
| 3MQD | 2010 | 9 |
| 3MPZ | 2010 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3m4s | - | https://www.nature.com/articles/srep30494 | Crystal structures of RidA, an important enzyme for the prevention of toxic side products | 2016 | X Liu, J Zeng, X Chen, W Xie- Scientific reports, 2016 - nature.com | 2DYY, dirty violet), and Entamoeba histolytica l-PSP ( PDB code 3M4S , gray) respectively unpublished), and a putative endoribonuclease l-PSP from Entamoeba histolytica ( PDB code3M4S, unpublished AtRidA is highly similar to other RidA family members in structure , and their |
| 2 | 3m1x | 3gp3 | https://pdfs.semanticscholar.org/b88b/677bceb020a7b157a866e774007d27e673e9.pdf | Expanding molecular modeling and design tools to non-natural sidechains. | 2012 | D Gfeller, O Michielin, V Zoete - J Comput Chem. 2012 Jul 5;33(18):1525-35. | Supplementary Figures 1JBO, 1KTP, 1PHN, 1QGW, 1XF6, 1XG0, 2BV8, 2C77, 2V8A, 2VJH, 2VJT, 3BRP, 3DBJ, 3O18, 3O2C |
| 3 | 3m1x | - | http://www.sciencedirect.com/science/article/pii/S1046202315002078 | Protein structure prediction guided by crosslinking restraints–A systematic evaluation of the impact of the crosslinking spacer length | 2015 | T Hofmann, AW Fischer, J Meiler, S Kalkhof - Methods, 2015 - Elsevier | ... Based on the structure of calmodulin (PDB entry 2ksz) the average Cβ–Nz, Cβ–Cγ, Cβ–Cδ,Cβ–N H2 , and Cβ–S G distances ... Structure, Uniprot, Resolution [Å], Molecular weight [Da],Sequence length [aa], Lys portion [%], α-helix [%], β-sheet ... 3m1x, C4LXT9, 1.2, 15882, 138, 7, ... |
| 4 | 3m1x | 3i3f, 3m4s, 3mqw | https://scripts.iucr.org/cgi-bin/paper?ft5116 | Crystal structure of a hypothetical protein from Giardia lamblia | 2022 | DK Beard, S Bristol, K Cosby, A Davis- Section F: Structural, 2022 - scripts.iucr.org | One of these proteins is a putative endonuclease from Entamoeba histolytica ( PDB entries 3mqw, 3m1x and 3m4s; 36% sequence identity and 56% coverage; Seattle Structural |
| 5 | 3lrf | - | https://www.sciencedirect.com/science/article/pii/S1093326323001638 | Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches | 2023 | E Albayrak, S Koer, O Mutlu- Journal of Molecular Graphics and Modelling, 2023 - Elsevier | FabB from Vibrio cholerae ( PDB ID: 4XOX ) was selected as a template structure with 57.46% identity for the homology modeling. After modeling, GMQE (Global Model Quality Estimate) ... |
| 6 | 3lr0 | - | https://arxiv.org/abs/2009.07466 | The role of hydrophobic interactions in folding of -sheets | 2020 | J Li, X Ma, H Zhang, C Hou, L Shi, S Guo- arXiv preprint arXiv, 2020 - arxiv.org | Nature Structural Biology 10, 980, doi:10.1038/nsb1203-980 (2003). 19 Berman, H., Henrick, K., Nakamura, H. & Markley, JL The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data Structure relaxation via long trajectories made stable |
| 7 | 3lnc | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4631842 | Zno-S. Cerevisiae: An Effective Growth Promoter of Astragalus Memeranaceus and Nano-Antibacterial Agent Against Fusarium Oxysporum by Improving Trifolirhizin | 2023 | Y Su, W Yang, R Wang, H Zhang, J Meng- Available at SSRN - papers.ssrn.com | 3D crystal structures were imported into , PDB ID: 3o7q was selected for MFS transporter, guanylate kinase based 607 on PDB ID: 3lnc , sedoheptulose-bisphosphatase based on PDB |
| 8 | 3lls | - | http://scripts.iucr.org/cgi-bin/paper_yard?pu5363 | Crystallization and preliminary X-ray diffraction analysis of the high molecular weight ketoacyl reductase FabG4 complexed with NADH | 2012 | D Dutta, S Bhattacharyya, AK Das - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Teplyakov, A. (2010). Acta Cryst. D66, 22-25.] ), using a monomer of the apo FabG4 structure (PDB entry 3lls ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) as a search model. A promising result ... |
| 9 | 3lls | - | http://www.biochemj.org/bj/450/bj4500127.htm | Crystal structure of hexanoyl-CoA bound to beta-ketoacyl reductase FabG4 of Mycobacterium tuberculosis | 2013 | D Debajyoti, B Sudipta, R Amlan, B Rupam? - Biochemical Journal, 2013 - biochemj.org | ... The structure of the FabG4?NADH complex was determined by molecular replacement in MOLREP [21] using a monomer of the apoFabG4 structure (PDB code 3LLS). ... MtFabG1 (MabA;PDB code 1UZM) and FabG4 (PDB codes 3LLS and 3Q6I) were chosen as the receptor. ... |
| 10 | 3lgj | 3pgz | https://patents.google.com/patent/US20180179500A1/en | Modified enzymes | 2018 | AJ Heron, RV Bowen, M Bruce- US Patent App. 15, 2018 - Google Patents | In order to assess whether a suitable protein structure exists to use as a template to build a protein model, a search is performed on the protein data bank ( PDB ) database The sequence alignment and template structure are then used to produce a structural model of the The polynucleotide binding motif may be selected from any of those shown in Table 5 below. Bartonella 3LGJ, Q6G302 homo-tetramer |