We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4HR3 | 2012 | 1 |
| 4HR2 | 2012 | 3 |
| 4HJH | 2012 | 3 |
| 4HDT | 2012 | 0 |
| 4H7P | 2012 | 7 |
| 4H51 | 2012 | 11 |
| 4H4G | 2012 | 2 |
| 4H3Z | 2012 | 6 |
| 4H3Y | 2012 | 0 |
| 4H3E | 2012 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3nrr | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13662/full | Structural analysis of dihydrofolate reductases enables rationalization of antifolate binding affinities and suggests repurposing possibilities | 2016 | A Bhosle, N Chandra - FEBS Journal, 2016 - Wiley Online Library | ... due to conservation of overall structure makes it feasible to study variation at each ... C9 (P.falciparum:Tyr 57 and Phe 223; PDB ID: 1J3I), B.bovis (Phe 40 and Phe 161; PDB ID: 3NRR), C.hominis(Phe 35 and Phe 172; PDB ID: 3HJ3) and E.faecalis (Phe 30 and Tyr ... |
| 2 | 3nrr | - | http://www.tandfonline.com/doi/abs/10.1080/07391102.2016.1186560 | Human Dihydrofolate Reductase and Thymidylate Synthase form a complex in vitro and co-localize in normal and cancer cells | 2016 | A Antosiewicz, A Jarmua, D Przybylska - Structure and , 2016 - Taylor & Francis | ... (Konagurthu, Whissto Stuckey, & Lesk, 2006). The AB dimer of the human TS structure 1HVY(Phan et al., 2001) and monomer A of the DHFR structure 1KMS (Klon et al., 2002) ... PDB ID: 3NRR)(Begley et al., 2011), Cryptosporidium hominis (Ch; PDB ID: 1QZF) ... |
| 3 | 3nrr | 3i3r | http://www.sciencedirect.com/science/article/pii/S0041010115001002 | Homology modeling, vasorelaxant and bradykinin-potentiating activities of a novel hypotensin found in the scorpion venom from Tityus stigmurus | 2015 | RJA Machado, LGM Junior, NKV Monteiro… - Toxicon, 2015 - Elsevier | ... thymidylate synthase from B. bovis with dUMP, Ralitrexed and NADP (PDB ID: 3NRR, ChainA ... Protein Data Bank are listed here in increasing order of identity: X-ray structure dihydrofolatereductase/thymidylate synthase from B. bovis at 2.35 Å resolution (PDB ID: 3I3R ... |
| 4 | 3nrr | - | http://onlinelibrary.wiley.com/doi/10.1002/minf.201600156/full | Pharmacoinformatic Study on the Selective Inhibition of the Protozoan Dihydrofolate Reductase Enzymes | 2017 | VK Sharma, S Abbat, PV Bharatam - Molecular Informatics, 2017 - Wiley Online Library | ... The three dimensional crystal structure with PDB IDs, 3INV for AdDHFR (48.82%), HmmDHFR (50.24 ... 50.72 %), LdDHFR (50.49 %), and LmDHFR (50.98%), 4EIL for TtDHFR (37.57%), 3NRR for BgDHFR ... drug design process.[46] It was observed that the 3D structure of the ... |
| 5 | 3njd | 3svk | http://search.proquest.com/openview/ee126ccbca4d4d8958dd7f9217f8fdd2/1?pq-origsi... | Protein 3-D Structure Representation for Alignment-Free Comparison and Structural Motif Discovery of Proteins, and Hierarchical Protein Classification | 2015 | S Singh - 2015 - search.proquest.com | ... a lot more diversity and complexity, rather than having a simple, unique rigid structure, and that ...of a growing number of methods, there is no widely accepted 3-D structural alignment method.None of the current methods for searching PDB are guaranteed to find true matches in ... |
| 6 | 3ngj | - | http://www.jbc.org/content/295/2/597.short | Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1, 3-butanediol | 2020 | T Kim, PJ Stogios, AN Khusnutdinova, K Nemr- Journal of Biological, 2020 - ASBMB | DERA structures as the best matches, including the Entamoeba histolytica DeoC ( PDB code 3NGJ ; Z score RMSD, 0.6 ; 66% sequence identity), and L. brevis DERA E78K mutant ( PDB code 4XBS; Z Based on the BH1352 structure , its active site is located inside of the -barrel |
| 7 | 3ngj | - | http://www.springerlink.com/index/M06H55885X675605.pdf | Characterization and application of a newly synthesized 2-deoxyribose-5-phosphate aldolase | 2013 | ZY You, ZQ Liu, YG Zheng, YC Shen - Journal of industrial microbiology & Biotechnology, 2013 - Springer | ... The crystal structures of DERAs from Entamoeba histolytica (PDB accession NO. 3NGJ) and Thermotoga maritima (PDB accession NO. 3R12) were used as templates. ... 3NGJ, resolution 1.70 A?) and Thermotoga maritima (54.3 % identity; PDB accession no. ... |
| 8 | 3ngf | - | http://link.springer.com/article/10.1007/s13205-014-0274-1 | Structure-based function analysis of putative conserved proteins with isomerase activity from Haemophilus influenzae | 2014 | M Shahbaaz, F Ahmad, MI Hassan - 3 Biotech, 2014 - Springer | ... was used for structure- based function annotation and for predicting structural motifs associated ...by DALI server that compares the target structure with known structure submitted in PDB. Thesecondary structure elements are computed from atomic resolution protein structures of ... |
| 9 | 3ng3 | - | http://link.springer.com/article/10.1007/s12275-016-6029-4 | Structural insight for substrate tolerance to 2-deoxyribose-5-phosphate aldolase from the pathogen Streptococcus suis | 2016 | TP Cao, JS Kim, MH Woo, JM Choi, Y Jun, KH Lee - Journal of , 2016 - Springer | ... avium DERA (MaDERA, PDB code: 3NG3) as a search mo- del (Baugh et al., 2015)using the CCP4i program MOLREP (Vagin and Teplyakov, 2010). The FL-SsDERAstructure was used as a search model for SL-SsDERA. ... |
| 10 | 3nfw | 4l82 | https://www.sciencedirect.com/science/article/pii/S0003986118302182 | Crystal structure of the flavin reductase of Acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (HPAH) and identification of amino acid residues | 2018 | A Yuenyao, N Petchyam, N Kamonsutthipaijit- Archives of Biochemistry, 2018 - Elsevier | The structure was refined to 2.9 resolution with an R work and R free of 0.2534 and 0.2889, respectively somnus ( PDB ID: 2R0X, Z = 21.8 RMSD = 1.3 ), Mycobacterium thermoresistibile nitrilotriacetate monooxygenase component B (NTA-MoB) ( PDB ID: 3NFW , Z = 21.5 |