SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 4qhq - http://www.degruyter.com/dg/justaccepted.articlelist.resultlinks.fullcontentlink... The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex. 2015 PT Nguyen, QW Li, NS Kadaba, JY Lai, JG Yang… - Biological …, 2015 - degruyter.com ... structures with PDB entries 3TQW, 3UP9, 4EF1, 4GOT, 4IB2, 4K3F, 4QHQ, 4QYM, and 4Q5T. ...2008) that was in turn solved by molecular replacement from PDB entry 1P99 (Williams et al.,2004), a Gly-Met-binding protein. ... Coordinates and structure factors have been ...
2 4eqy - http://pubs.acs.org/doi/abs/10.1021/acs.biochem.5b00720 Structures of Pseudomonas aeruginosa LpxA Reveal the Basis for Its Substrate Selectivity 2015 EW Smith, XJ Zhang, C Behzadi, LD Andrews - Biochemistry, 2015 - ACS Publications ... Superimposition of all three monomers from the biologically relevant homotrimer, showing loops L1 and L2. (D) P. aeruginosa LpxA monomer superimposed onto eight ortholog LpxA monomeric structures (E. coli (PDB ID: 1LXA), B. thailandensis (PDB ID: 4EQY), ...
3 3r7k - http://journals.iucr.org/d/issues/2015/04/00/mh5170/mh5170bdy.html A covalent adduct of MbtN, an acyl-ACP dehydrogenase from Mycobacterium tuberculosis, reveals an unusual acyl-binding pocket 2015 AF Chai, EMM Bulloch, GL Evans, JS Lott… - Acta Cryst. (2015). D71, 862-872 …, 2015 - journals.iucr.org ... 2.10.0. Cambridge: Global Phasing Ltd.] ) alternating with manual rebuilding of the molecularstructure using Coot ... Protein, PDB code, C9-N10-N5-C4 (°), Distortion (°), Reference. ... Acyl-CoAdehydrogenase, 3r7k, 157.7, 22.3, Seattle Structural Genomics Center for Infectious Disease ...
4 4n0w - http://peds.oxfordjournals.org/content/early/2015/05/17/protein.gzv026.short Conserved water molecules in bacterial serine hydroxymethyltransferases 2015 T Milano, ML Di Salvo, S Angelaccio… - … Design and Selection, 2015 - Oxford Univ Press ... After PDB scrutiny, 11 structures were selected on the basis of better resolution, the absenceof point ... (2003) and Mustata and Briggs (2004) who analyzed the structural role of ... MD simulationswere carried out on the dimer in the apo form of the structure 4N0W corresponding to ...
5 3uk1 3upt http://scripts.iucr.org/cgi-bin/paper?tt5073 High-resolution structures of Lactobacillus salivarius transketolase in the presence and absence of thiamine pyrophosphate 2015 P Lukacik, CMC Lobley, M Bumann - Section F: Structural , 2015 - scripts.iucr.org ... In this work, we present high-resolution crystal structures of the L. salivarius UCC118 Tkt protein(LsTktA) in the presence and absence ... Burkholderia thailandensis (PDB entry 3uk1 ), B. pseudomallei (PDB entry 3upt ), ...
6 4iv5 - http://www.mdpi.com/1422-0067/16/8/18836/pdf From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases 2015 D Shi, NM Allewell, M Tuchman - International Journal of Molecular …, 2015 - mdpi.com ... dodecameric holoenzyme with DHOase, were determined [50,51]. Only one eukaryotic ATCasestructure, of Trypanosoma cruzi, has been determined (PDB code: 4IV5). ... Both domains havean αβα structure with a parallel β-sheet in the center and α helices on both sides. ...
7 3ndn - http://mic.sgmjournals.org/content/160/Pt_8/1571.short Bacterial methionine biosynthesis 2014 MP Ferla, WM Patrick - Microbiology, 2014 - Soc General Microbiol ... 2). Its presence in P. aeruginosa and P. putida has been discussed (Foglino et al., 1995; Alaminos & Ramos, 2001), and an unpublished structure of a Mycobacterium tuberculosis O-succinylhomoserine thiolase has been deposited in the Protein Data Bank (PDB ID 3NDN). ...
8 4o2d - http://dx.plos.org/10.1371/journal.pone.0113568.g009 Biochemical and Structural Characterization of Mycobacterial Aspartyl-tRNA Synthetase AspS, a Promising TB Drug Target 2014 SS Gurcha, V Usha, JAG Cox, K Fütterer, KA Abrahams… - PloS one, 2014 - dx.plos.org ... The corresponding loop in E. coli AspRS is 11 amino acid residues shorter (Figure 7). Anapo-structure of Ms-AspS has recently been deposited in the PDB (entry 4O2D), in which thisloop assumes a very different conformation, forming a 2-turn α-helix and folding back ...
9 4fzi - http://www.sciencedirect.com/science/article/pii/S0014489414000472 < i> Trypanosoma cruzi</i> chemical proteomics using immobilized benznidazole 2014 A Trochine, G Alvarez, S Corre, P Faral-Tello - Experimental , 2014 - Elsevier ... Murta et al., 2006). In addition, TcOYE and TcAKR have equivalent tertiary structures. TcAKR was crystallized in the apo form and its structure was recently deposited at a 2.6 resolution [PDB: 4fzi]. The protein has an (alpha ...
10 3eiy - http://www.sciencedirect.com/science/article/pii/S1570963914001095 Asn112 in< i> Plasmodium falciparum</i> glutathione S-transferase is essential for induced reversible tetramerization by phosphate or pyrophosphate 2014 I Quesada-Soriano, C Barn, R Tllez-Sanz - et Biophysica Acta (BBA , 2014 - Elsevier ... the alignment between one of the docking poses for the binding of pyrophosphate to the PfGST tetramer near the Asn112–Lys117 closed-square pattern and three of the pyrophosphatase structures (3Q4W from Thermococcus thioreducens, 3EIY from Burkholderia pseudomallei and 2AUU/1I6T from E. coli), is suspiciously good. ...