We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3KZX | 2009 | 4 |
| 3KXQ | 2009 | 5 |
| 3KX6 | 2009 | 4 |
| 3KW3 | 2009 | 8 |
| 3KRS | 2009 | 13 |
| 3KRE | 2009 | 6 |
| 3KRB | 2009 | 9 |
| 3KNU | 2009 | 3 |
| 3KM3 | 2009 | 11 |
| 3KJR | 2009 | 6 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3lg6 | - | http://www.sciencedirect.com/science/article/pii/S0304416514003171 | Molecular dynamics for computational proteomics of methylated histone H3 | 2014 | C Grauffel, RH Stote, A Dejaegere - Biochimica et Biophysica Acta (BBA)- …, 2014 - Elsevier | ... This analysis is made possible by the substantial amount of structural information available oncomplexes between PHD domains and modified histone tails. ... Protein Data Bank IDs are indicated,and NMR structures are labeled with a (*). Protein name, Ref. ... PDB structure. ... |
| 2 | 3ld9 | 3v9p | http://scripts.iucr.org/cgi-bin/paper?S1744309112050208 | Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of thymidylate kinase (TTHA1607) from Thermus thermophilus HB8 | 2013 | SK Chaudhary, J Jeyakanthan? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... aureus (PDB entry 4f4i ; Midwest Center for Structural Genomics, unpublished work), Burkholderia thailandensis (PDB entry 3v9p ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Ehrlichia chaffeensis (PDB entry 3ld9 ; Leibly et al., 2011 [Leibly ... |
| 3 | 3lb5 | 3r6f, 3p0t, 3oxk, 3o0m | http://onlinelibrary.wiley.com/doi/10.1111/febs.12330/full | Structural characterization of human histidine triad nucleotide-binding protein 2, a member of the histidine triad superfamily | 2013 | KM Maize, CR Wagner, BC Finzel - FEBS Journal, 2013 - Wiley Online Library | ... conformational change from an 'open' to a 'closed' form during catalysis [eg Protein Data Bank (PDB) code: 3BL9 ... proteins that have not been described or compared in the literature (ie PDB structures: 1XQU, 1Y23, 2EO4, 2OIK, 3ANO, 3IMI, 3I4S, 3124, 3LB5, 3L7X, 3KSV ... |
| 4 | 3laa | 4g6c | http://scitation.aip.org/content/aip/journal/jcp/140/23/10.1063/1.4882258 | Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis | 2014 | K Opron, K Xia, GW Wei - The Journal of chemical physics, 2014 - scitation.aip.org | ... The FRI is a solely structural based algorithm that does not reconstruct any protein inter- action ...the FRI prediction of protein B-factors does not require a stringently minimized structure and time ...The fFRI algorithm is developed by using appropriate data structures to avoid the ... TABLE V 3LAA 169 0.827 |
| 5 | 3laa | - | http://scripts.iucr.org/cgi-bin/paper?mh5193 | Selecting soluble/foldable protein domains through single-gene or genomic ORF filtering: structure of the head domain of Burkholderia pseudomallei antigen | 2015 | LJ Gourlay, C Peano, C Deantonio - Section D: Biological , 2015 - scripts.iucr.org | ... 1 [link] , Supplementary Tables S1 and S2). The 1.8 resolution crystal structure of BPSL2063Xtal was solved by molecular replacement using the structure of BpaA (PDB entry 3laa ; Edwardset al., 2010 [Edwards, TE, Phan, I., Abendroth, J., Dieterich, SH, Masoudi, A ... |
| 6 | 3laa | - | http://archive.hshsl.umaryland.edu/handle/10713/3641 | Functional Analysis of the Polymorphic Membrane Protein Family of Chlamydia | 2013 | V Grinblat-Huse - 2013 - archive.hshsl.umaryland.edu | ... The trimeric autotransporter adhesin head domain [RCSB indentifier 3LAA] from Burkholderia pseudomallei and the outer membrane adhesin/invasin [RCSB identifier 1K24] from Neisseria meningitidis were also used to attempt a structure prediction ... |
| 7 | 3laa | - | https://arxiv.org/abs/2411.03112 | Multiscale differential geometry learning for protein flexibility analysis | 2024 | H Feng, JY Zhao, GW Wei- arXiv preprint arXiv:2411.03112, 2024 - arxiv.org | Each PDB structure includes a set of global features, such as PDB files. Local features for each protein include packing density, amino acid type, occupancy, and secondary structure |
| 8 | 3laa | 3la9 | https://link.springer.com/article/10.1007/s00430-019-00652-3 | Recent advances in the understanding of trimeric autotransporter adhesins | 2019 | AR Kiessling, A Malik, A Goldman- Medical Microbiology and Immunology, 2019 - Springer | ring (Orange) domains. c Top view of Hia BD1( PDB ID:1S7M) rep- resenting tryptophan side chain from each monomer. d Structure of BpaA ( PDB ID: 3LAA ) representing FGG (Violet purple), short neck (Olive), head (Teal), long neck (Blue) domains |
| 9 | 3laa | - | http://scitation.aip.org/content/aip/journal/jcp/139/19/10.1063/1.4830404 | Multiscale multiphysics and multidomain models—Flexibility and rigidity | 2013 | K Xia, K Opron, GW Wei - The Journal of chemical physics, 2013 - scitation.aip.org | ... The conventional dogma of sequence-structure-function2 has been seriously challenged by the ...Structures 1DF4 and 2Y7L (top) represent the high scoring structures, those with scores near 0.9. Structures 2Y7L and 3LAA (bottom) show the typical pattern for correlation scores based on parameter values for the majority of proteins. ... |
| 10 | 3laa | - | https://www.sciencedirect.com/science/article/pii/S1047847719301728 | Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding | 2019 | KM Mikula, R Kolodziejczyk, A Goldman- Journal of structural biology, 2019 - Elsevier | 2012) as found in SadA (2YO2, 2YNZ) (Hartmann et al., 2012) or BpaA ( 3LAA ) (Edwards et CCP4 package (Winn et al., 2011) with the structure of UspA1 165366 ( PDB : 3PR7) (Agnew Model of UspA1 299452 structure solved in this study, neck and coiled-coil domains; chain |