We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KI8 | 2021 | 0 |
| 7KI9 | 2021 | 0 |
| 7TJ3 | 2022 | 0 |
| 7TI7 | 2022 | 0 |
| 7KQZ | 2020 | 0 |
| 7L2A | 2020 | 0 |
| 7L32 | 2020 | 0 |
| 7L3P | 2020 | 0 |
| 7L4A | 2020 | 0 |
| 7TCM | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6q05 | - | https://biointerfaceresearch.com/wp-content/uploads/2020/05/2069583710560396057.... | Evaluation of Coronavirus families & Covid-19 proteins: molecular modeling study | 2020 | M Monajjemi, S Shahriari- Biointerface Res. Appl, 2020 - biointerfaceresearch.com | Several Proteins, receptors, S proteins including s1 and s2 such as 6LU7, 6Q05 , 4oW0, 6nur The Structure Preparation modules of MOE were used to correct PDB inconsistencies and to assign the structural knowledge of the CoV-RNA synthesis complexes was a structure of the |
| 2 | 6n41 | - | https://bibliotecadigital.exactas.uba.ar/download/tesis/tesis_n7210_SosaHolt.pdf | Diseo, desarrollo y caracterizacin bioqumica y funcional de nanoanticuerpos VHH monovalentes dirigidos contra las protenas del virus de influenza tipo A | 2022 | CSS Holt - bibliotecadigital.exactas.uba.ar | El virus de la Influenza tipo A contina siendo responsable de brotes y epidemias, adems de pandemias con graves consecuencias para la salud humana. Los virus tipo H1N1 y ... En ambos casos el templado con mayor posición en ranking fue el PDB 6N41(A/Netherlands/002P1/1951 (H1N1)) dado su alta identidad de secuencia |
| 3 | 4k9d | 4l83 | https://benthamopen.com/FULLTEXT/TOBCJ-5-72 | Review on Computational Approaches for Identification of New Targets and Compounds for Fighting Against Filariasis | 2017 | M Mishra, P Srivastava- The Open Bioactive Compounds, 2017 - benthamopen.com | S100a12MMDB ID: 73787 PDB ID: 2WCF [Metal Binding Protein], Glyceraldehyde 3-phosphate dehydrogenase MMDB ID: 109769 PDB ID: 4K9D etc.) in In molecular biology and structural genomics, protein structure determination has become an important area of research |
| 4 | 2lxf | - | https://baylor-ir.tdl.org/handle/2104/10322 | Machine Learning-assisted Prediction of Structure and Function of Cystine-stabilized Peptides and Optimization of Expression in an E. coli System | 2018 | SMA Islam - 2018 - search.proquest.com | Each type is annotated with its name, PDB id, function and jmol estimated average 3D structural distance between disulfide bonds PBS Phosphate buffered saline PDB Protein data bank QSAR Quantitative structure activity relationship QSO Quasi-sequence-order |
| 5 | 3gaf | - | https://baadalsg.inflibnet.ac.in/jspui/bitstream/10603/196179/12/12_chapter%204.... | Sequence and structural studies of proteins associated with cell wall biosynthesis lipolysis and isoniazid drug resistance in Mycobacterium tuberculosis | 2018 | S Anishetty - 2018 - baadalsg.inflibnet.ac.in | Page 4. 63 of recognizing the native structure out of decoy structures 3D coordinates of Isoniazid-NAD adduct ( PDB : 2IDZ) and Triclosan ( PDB : 3OID) was obtained from PDB Rv0547c Oxidoreductase 5e-35 20% FX6-K - Rv0927c Oxidoreductase 1e-32 23% FX6-K 3GAF 41.32 |
| 6 | 6axe | 4ex4 | https://aspace.repository.cam.ac.uk/handle/1810/298685 | The glyoxylate shunt as a target for antibacterial intervention in Pseudomonas aeruginosa | 2019 | AC McVey - 2019 - aspace.repository.cam.ac.uk | The structure of MSG from four prokaryotic species has been resolved by X-ray crystallography: E. coli... Mycobacterium marinum (PDB entry 6AXE), and Mycobacterium leprae (PDB entry 4EX4). Also, the E. coli MSG structure has been solved by NMR |
| 7 | 3laa | - | https://arxiv.org/abs/2411.03112 | Multiscale differential geometry learning for protein flexibility analysis | 2024 | H Feng, JY Zhao, GW Wei- arXiv preprint arXiv:2411.03112, 2024 - arxiv.org | Each PDB structure includes a set of global features, such as PDB files. Local features for each protein include packing density, amino acid type, occupancy, and secondary structure |
| 8 | 3dmp | - | https://arxiv.org/abs/2111.07786 | Independent SE (3)-Equivariant Models for End-to-End Rigid Protein Docking | 2021 | OE Ganea, X Huang, C Bunne, Y Bian- arXiv preprint arXiv, 2021 - arxiv.org | the 3D structure of a protein-protein complex from the individual unbound structures , of the initial locations and orientations of the two structures . Our model, named EQUIDOCK, |
| 9 | 5vcu | - | https://arxiv.org/abs/2102.03202 | Interpretable Neural Networks based classifiers for categorical inputs | 2021 | S Zamuner, PDL Rios- arXiv preprint arXiv:2102.03202, 2021 - arxiv.org | cartoon representation of RAS protein (green) bounded to GDP (light blue spheres) from pdb 5vcu belonging to the most relevant predicted triplets are clustered in the structure of the Note that, to better compare to plmDCA, the same architecture and hyperparameters have |
| 10 | 6nb7 | 6nb6 | https://arxiv.org/abs/2101.01884 | Exploring the Regulatory Function of the N-terminal Domain of SARS-CoV-2 Spike Protein Through Molecular Dynamics Simulation | 2021 | Y Li, T Wang, J Zhang, B Shao, H Gong- arXiv preprint arXiv, 2021 - arxiv.org | taking the S proteins of SARS-CoV with 2 upward RBDs ( PDB ID: 6NB6) (21) and 3 upward RBDs ( PDB ID: 6NB7 ) (21) as We also conducted a time- structure based Independent Components Analysis (tICA) (34, 35) to identify slow motions with high time autocorrelation on |