We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3KE1 | 2009 | 9 |
| 3KCQ | 2009 | 2 |
| 3KC6 | 2010 | 9 |
| 3K9W | 2009 | 7 |
| 3K9G | 2009 | 8 |
| 3K5P | 2009 | 3 |
| 3K2X | 2009 | 4 |
| 3K2H | 2009 | 11 |
| 3K2C | 2009 | 4 |
| 3K14 | 2009 | 7 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3krs | - | https://www.mdpi.com/2076-2607/8/1/40 | Gene Cloning, Recombinant Expression, Characterization, and Molecular Modeling of the Glycolytic Enzyme Triosephosphate Isomerase from Fusarium oxysporum | 2020 | B Hernndez-Ochoa, S Gmez-Manzo- Microorganisms, 2020 - mdpi.com | Triosephosphate isomerase (TPI) is a glycolysis enzyme, which catalyzes the reversible isomerization between dihydroxyactetone-3-phosphate (DHAP) and glyceraldehyde-3-phosphate (GAP). In pathogenic organisms, TPI is essential to obtain the energy used to survive and infect ... Figure 2. Bioinformatic analysis of FoxTPI with other triosephosphate isomerases (TPIs)... , 3KRS (Cryptosporidium Parvum), 5UPR (Toxoplasma gondii), |
| 2 | 3kre | - | http://pubs.acs.org/doi/abs/10.1021/ci400306m | Molecular dynamics perspective on the protein thermal stability: A case study using SAICAR synthetase | 2013 | K Manjunath, K Sekar - Journal of chemical information and modeling, 2013 - ACS Publications | ... PDB. The structure of SAICAR synthetase from E. coli (PDB-id: 2gqr), E. chaffeensis (PDB-id: 3kre), G. kaustophilus (PDB- id: 2ywv), M. jannaschii (PDB-id: 2z02) and P. horikoshii (PDB-id: 3u55) were considered for simulation ... |
| 3 | 3kre | - | http://scripts.iucr.org/cgi-bin/paper?fw5260 | Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of SAICAR synthase from Streptococcus suis serotype 2 | 2010 | X Cheng, G Lu, J Qi, H Cheng, F Gao? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2010 - scripts.iucr.org | ... F62, 335-339.] ), Ehrlichia chaffeensis (PDB code 3kre ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Pyrococcus horikoshii OT3 (Manjunath et al., 2010 [Manjunath, K., Jeyakanthan, J., Nakagawa, N., Shinkai, A., Yoshimura, M., Kuramitsu, S ... |
| 4 | 3kre | 3r9r | http://www.sciencedirect.com/science/article/pii/S0141813012004254 | Structure of SAICAR synthetase from< i> Pyrococcus horikoshii</i> OT3: Insights into thermal stability | 2013 | K Manjunath, SP Kanaujia, S Kanagaraj? - International journal of ?, 2012 - Elsevier | ... of the native and its complex from S. cerevisiae (PDB-ids: 1obg, 1obd, 2cnu, 2cnv, 2cnq), T. maritima (PDB-id: 1kut; [36]), E. coli (PDB-ids: 2gqs, 2gqr; [37]), G. kaustophilus (PDB-id: 2ywv), M. jannaschii (PDB-ids: 2z02, 2yzl), E. chaffeensis (PDB-id: 3kre), C. perfringens (PDB-id ... |
| 5 | 3kre | - | http://www.freepatentsonline.com/y2019/0209493.html | NOVEL APPLICATIONS OF SPERMINE AND DERIVATIVES THEREOF | 2019 | W Pan, W Zhu- US Patent App. 16/334,273, 2019 - freepatentsonline.com | Thermotoga maritime (1KUT), Clostridium perfringens (3NUA), Ehrlichia chaffeensis ( 3KRE ), Geobacillus kaustophilus On the basis of the above results, the crystal structure conformations in of Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) are |
| 6 | 3kre | - | http://www.freepatentsonline.com/y2019/0209499.html | COMPOUNDS WEAKENING SAICAR SYNTHETASE ACTIVITY AND APPLICATIONS | 2019 | W Pan, W Zhu- US Patent App. 16/334,256, 2019 - freepatentsonline.com | 3R9R), Thermotoga maritime (1KUT), Clostridium perfringens (3NUA), Ehrlichiachaffeensis ( 3KRE ), Geobacilluskaustophilus (2YWV basis of the above results, the crystal structure conformations in Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) |
| 7 | 3krb | - | https://repositorio.ul.pt/handle/10451/2032 | Methylglyoxal metabolism in Leishmania infantum | 2010 | LIS Barata - 2010 - repositorio.ul.pt | ...Besides the human enzyme, there are also accessible other aldose reductase structures from other organisms, including the protozoan Giardia lamblia (PDB entry 3KRB (Seattle Structural Genomics Center for Infectious Disease, to be published)) and the mammal Sus scrofa (PDB entry 1AH4 (Urzhumtsev et al. 1997)).. ... |
| 8 | 3krb | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14667 | Crystal structure of yeast xylose reductase in complex with a novel NADPDTT adduct provides insights into substrate recognition and catalysis | 2018 | B Paidimuddala, SB Mohapatra, SN Gummadi- The FEBS, 2018 - Wiley Online Library | [20, 21] and Giardia lamblia (GlAR; PDB : 3KRB ) homologs [22]. The AKR fold is a namely, hAR bound to D-glyceraldehyde ( PDB : 3V36) and to glucose-6-phosphate ( PDB : 2ACQ) [15, 35] described the enzyme-glyceraldehyde interactions in detail, the structure shows that the |
| 9 | 3knu | - | http://scholarscompass.vcu.edu/etd/2725/?show=full | Dynamics of substrate interactions in tRNA (m1G37) methyltransferase: Implications for drug discovery | 2012 | MK Palesis - 2012 - scholarscompass.vcu.edu | ... The secondary structure of specific sequences is illustrated above the alignment. ... Page 29. 9 Figure6. Structural alignment of TrmD from different bacterial species: Anaplasma phagocytophilum(royal blue, PDB ID: 3KNU), Bartonella henselae (cyan, PDB ID: 31EF ... |
| 10 | 3kjr | - | http://pubs.acs.org/doi/abs/10.1021/ci300349s | Are homology models sufficiently good for free-energy simulations? | 2012 | S Genheden - Journal of chemical information and modeling, 2012 - ACS Publications | ... factor IXa (pdb code: 1rfn(36)) with 44% sequence identity and protein C (pdb code: 1aut ... Suitable template proteins for dhfr were found by a FASTA search(38) of the protein databank. ... The results of the FASTA search are summarized in Table 1. Finally, 2bl9, 3kjr, and 2oip were ... |