We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TM5 | 2022 | 0 |
| 7TM6 | 2022 | 0 |
| 7TM7 | 2022 | 0 |
| 7TM8 | 2022 | 0 |
| 7TM9 | 2022 | 0 |
| 7TMB | 2022 | 0 |
| 7TMD | 2022 | 0 |
| 7TMF | 2022 | 0 |
| 7TMG | 2022 | 0 |
| 7TMV | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5bt8 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200302 | Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea | 2020 | M Rojas-Pirela, D Andrade-Alvirez- Open, 2020 - royalsocietypublishing.org | bacteria, PGK, monomer, open, , 6I06, [39]. Acinetobacter baumannii, bacteria, PGK, monomer, , , 5BT8 , Fairman et al. (NA) Figure 3. Three-dimensional structure of phosphoglycerate kinase. (a) Ribbon representation of the overall structure of pig muscle PGK ( PDB : 1HDI) |
| 2 | 5cc8 | - | https://etd.auburn.edu/handle/10415/6361 | Transition from classical methods to new strategies: Mechanistic evaluation of inhibitors against Mycobacterium tuberculosis shikimate kinase | 2018 | N Ren Fuanta - 2018 - etd.auburn.edu | of each family. As stated previously, structural information and interactions with substrate(s) or Group Family and members Example Structure Group 1: Protein S/TY kinase/ atypical protein kinase/ lipid kinase/ ATP- grasp Thiamine-monophosphate kinase PDB : 5CC8 (50) |
| 3 | 5cy4 | - | https://www.nature.com/articles/s41598-019-39641-0 | Structural basis of small RNA hydrolysis by oligoribonuclease (Cps ORN) from Colwellia psychrerythraea strain 34H | 2019 | CW Lee, SH Park, CS Jeong, SS Cha, H Park- Scientific reports, 2019 - nature.com | Structure alignment search using DALI server showed that CpsORN exhibited high structural similarity with ORN HinORN; PDB code 1J9A), and Acinetobacter baumannii (AbaORN; PDB code 5CY4 ), and XC847 from Xanthomonas campestris (XcaORN; PDB code 2GBZ |
| 4 | 5cy4 | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2019.1643786 | Structural and dynamic studies provide insights into specificity and allosteric regulation of ribonuclease as, a key enzyme in mycobacterial virulence | 2019 | L Calvanese, F Squeglia, M Romano- Structure and, 2019 - Taylor & Francis | Despite this, its structure , a dimeric molecule with each monomer adopting a compact entry 4OKE) from Mycobacterium tuberculosis against the Protein Data Bank ( PDB ) using the Coxiella burnetii (Coxbu) (3TR8, Z-score 13.8), Acinetobacter baumannii (Aciba) ( 5CY4 , Z-score |
| 5 | 5cy4 | - | https://academic.oup.com/nar/article-abstract/48/10/5572/5828917 | Human REXO2 controls short mitochondrial RNAs generated by mtRNA processing and decay machinery to prevent accumulation of double-stranded RNA | 2020 | M Szewczyk, D Malik, LS Borowski- Nucleic acids, 2020 - academic.oup.com | Here, we report comprehensive functional, biochemical, and structural studies to elucidate REXO2 function in human mitochondria We also demonstrate that REXO2 degrades RNA in a structure - and sequence-dependent manner. ... The model that was used for molecular replacement was oligoribonuclease from Acinetobacter baumnii (PDB ID: 5CY4, Seattle Structure Genomics Centre for Infectious Diseases), which shares 48.3% sequence identity with REXO2. |
| 6 | 5cy4 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12720 | Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity | 2019 | Y Piotrowski, K Berg, DP Klebl, I Leiros- FEBS open, 2019 - Wiley Online Library | campestris, PDB 1J9A: Haemophilus influenzae, PDB 2IGI: E. coli, PDB 3TR8: Coxiella burnetii, PDB 5CY4 : Acinetobacter baumannii) In the X. campestris Orn structure ( PDB 2GBZ) it is shown that Orn forms a dimer in the crystal From the structural analysis it was shown that |
| 7 | 5cy4 | - | http://rnajournal.cshlp.org/content/early/2019/03/29/rna.070557.119.abstract | Structural insights into nanoRNA degradation by human Rexo2 | 2019 | LY Chu, S Agrawal, YP Chen, WZS Yang, HS Yuan- RNA, 2019 - rnajournal.cshlp.org | 6A4E), or deposited in the protein data bank, including those from E. coli ( PDB codes: 1YTA, 2IGI), Acinetobacter baumannii ( PDB code: 5CY4 ), and Haemophilus influenzae ( PDB code 1J9A) Structural coordinates and diffraction structure factors of Rexo2-RNA, Rexo2-DNA1 |
| 8 | 5cy4 | - | https://munin.uit.no/handle/10037/17279 | A functional and structural study of three bacterial nucleic acid-interacting proteins. The story of a Ferric Uptake Regulator, an Oligoribonuclease and an ATP | 2020 | K Berg - 2020 - munin.uit.no | Acinetobacter baumannii (PDB 5CY4) and E. coli (PDB code 1YTA )[148]. All Orn homologs are structurally similar and topologically arranged |
| 9 | 5dd7 | 5cm7 | https://www.sciencedirect.com/science/article/pii/B9780444639301000119 | Analysis of the Protein Binding Sites for Thiamin and Its Derivatives to Elucidate the Molecular Mechanisms of the Noncoenzyme Action of Thiamin (Vitamin B1) | 2017 | VI Bunik, VA Aleshin- Studies in Natural Products Chemistry, 2017 - Elsevier | Elucidation of protein targets of the noncoenzyme thiamin action is advanced through structure -based identification of thiamin- or derivatives-binding protein patterns, bioinformatics analysis of their distribution among proteins and pathways, and experimental verification of the ... Active sites of the enzymes of thiamin metabolism. (A) Bacterial ThMP kinase with ThMP, nonhydrolyzable analog of ATP, and bound ions of magnesium (green) and potassium (purple) (PDB ID: 5DD7), the protein carbons in dark g |
| 10 | 5dd7 | - | https://repository.up.ac.za/handle/2263/77810 | Structural and inhibition studies of thiamine monosphosphate kinase from Mycobacterium tuberculosis | 2020 | LS Dlamini - 2020 - repository.up.ac.za | OT Oxythiamine PDB Protein data bank 38 Figure 3.5: Crystal structure of MtbThiL homodimer ..... 40 bind to both free enzyme and the ES complex. Detailed structural information particularly high resolution crystal structures of substrate |