SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 5enu - http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005284 An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins 2017 AF Harper, JB Leuthaeuser, PC Babbitt - PLOS Computational , 2017 - journals.plos.org ... the PFAM family, and structural modelling to create active sites; ultimately structural comparisonsare ...Notably, the invariant Gly, Ser, and Asp of the G(V/I)SxD motif are all in the 5ENU active site, along with the conserved Leu. These distinctive features suggest that, indeed, these two subgroups are functionally distinct.. ...
2 5eo6 4wsh, 4exq http://mmbr.asm.org/content/81/1/e00048-16.short Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product 2017 HA Dailey, TA Dailey, S Gerdes, D Jahn… - Microbiology and …, 2017 - Am Soc Microbiol ...the structures of CgdC from yeast (PDB accession number 1TLB), human (accession number 2AEX), Leishmania major (accession number 3DWR), Leishmania donovani (accession number 3EJO), Leishmania naiffi (accession number 3E8J), and Acinetobacter baumannii (accession number 5EO6) have been solved, with all of them revealing an unprecedented fold for the monomer of large seven-stranded antiparallel β-sheets covered on both sides by α-helices..
3 5eo6 - https://scholarworks.montana.edu/xmlui/handle/1/14685 A molecular, structural, and cellular multiple-level study aimed at understanding the unique reaction catalyzed by the last enzyme in the heme-biosynthesis pathway of 2018 AI Celis Luna - 2018 - scholarworks.montana.edu Overlay of the structures of a representative heme b-bound chlorite dismutase and solvent This research aimed to understand ChdC function at the molecular, structural , and cellular levels The coproheme-bound ChdC structure revealed a helical-loop that is flexible and moves
4 5eo6 - http://search.proquest.com/openview/8ed519e66d770fcd1d89f1dbb2d646ac/1?pq-origsi... A Molecular, Structural, and Cellular Multiple-Level Study Aimed at Understanding the Unique Reaction Catalyzed by the Last Enzyme in the Heme-Biosynthesis 2018 AIC Luna - 2018 - search.proquest.com Overlay of the structures of a representative heme b-bound chlorite dismutase and solvent This research aimed to understand ChdC function at the molecular, structural , and cellular levels The coproheme-bound ChdC structure revealed a helical-loop that is flexible and moves
5 5eo6 4wsh, 4exq https://kar.kent.ac.uk/60615/1/Microbiol.%20Mol.%20Biol.%20Rev.-2017-Dailey-.pdf Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product 2017 A Bailey, R Webster, R Hunter, N Freemantle, G Rait - 2017 - Microbiol Mol Biol Rev The crystal structure of the P. aeruginosa enzyme shows that it is composed of Interestingly, crystal structures of P. aeruginosa variants with cysteine substitutions show decreasing Although structural information on porphobilinogen synthases from many sources shows that the
6 5eqz - https://hal.archives-ouvertes.fr/hal-01628162/ Iterative Decomposition Guided Variable Neighborhood Search for Graphical Model Energy Minimization 2017 A Ouali, D Allouche, S De Givry- on Uncertainty in, 2017 - hal.archives-ouvertes.fr Variable Neighborhood Search (VNS) (Mladenovic and Hansen, 1997) is a metaheuristic that uses a finite set of pre-selected neighborhood structures Nk,k = 1, 2, ..., kmax to escape from local minima by system- atically changing the neighborhood structure if the cur- rent one
7 5eqz - https://www.nature.com/articles/s41598-019-53830-x Membrane directed expression in Escherichia coli of BBA57 and other virulence factors from the Lyme disease agent Borrelia burgdorferi 2019 KE Robertson, CD Truong, FM Craciunescu, PL Chiu- Scientific reports, 2019 - nature.com All available structures from the genus Borrelia represent proteins expressed without a membrane Towards elucidating structure and function of these critical proteins, we directed translocation of to the outer membrane, Another criterion was the lack of structures in the PDB. RevA has a structure in the PDB33, a 1.80 Å crystal structure (accession no. 5EQZ, unpublished [J.K. Yano, A.H. Sullivan, J. Abendroth, D.D. Lorimer, and T.E. Edwards]), which is of the soluble domain that was expressed in the c
8 5ez3 - https://f1000research.com/articles/9-1268 Characterization of sulfated polysaccharide activity against virulent Plasmodium falciparum PHISTb/RLP1 protein 2020 JM Mutisya, VA Mobegi, JK Kinyua, MN Kivecu- , 2020 - f1000research.com sequences to the reference, 12 non-synonymous single nucleotide polymorphisms were considered for mutant protein structure analysis. Eleven drug compounds with antiplasmodial activity were identified. Both modelled PHISTb/RLP1 reference and mutant structures had a
9 5ez3 - https://www.mdpi.com/1422-0067/21/15/5391 Characterization of the Proteins Involved in the DNA Repair Mechanism in M. smegmatis 2020 A Di Somma, C Can, A Moretta, A Cirillo- International journal of, 2020 - mdpi.com The primary structure of the recombinant protein was verified by MALDI mapping strategy (Supplementary Materials, Table S4) and its correct folding assessed by circular The Acyl-CoA dehydrogenase from Brucella melitensis in complex with FAD ( PDB code 5EZ3 A) was
10 5ha4 - https://kronika.ac/wp-content/uploads/10F.pdf Computational modelling, molecular docking, and molecular dynamics simulation studies of Enterococcus faecalis diaminopimelate epimerase 2024 J Chaudhary, P Sharma, N Singh, VK Srivastava - kronika.ac .nlm.nih.gov] and converted to PDB format using Pymol software. of EfDapF was opened as PDB format, and polar hydrogen Co-crystal structure of DapF from C.glutamicum ... The available crystal structures of DapF from different organisms such as E.coli [PDB entry: 4IJZ], Bacillus anthracis [PDB entry: 2OTN], Acinetobacter baumannii [PDB entry: 5HA4],