We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9ZK5 | 2025 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| 7U56 | 2022 | 0 |
| 7U4H | 2022 | 0 |
| 7U35 | 2022 | 0 |
| 4K6C | 2013 | 0 |
| 4K3Z | 2013 | 0 |
| 7U2T | 2022 | 0 |
| 7U2Q | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2mj3 | - | https://www.duo.uio.no/handle/10852/45840 | Structural and functional characterisation of ferredoxins in Bacillus cereus | 2015 | S Monka - 2015 - duo.uio.no | ...as well as testing out models generated from several homologous PDB-structures. This server generated models from 10 PDB files (1I7H, 3AH7, 3ZYY, 1KRH, 3N9Z, 2MJ3, 3HUI, 2Y5C, 1JQ4, 2WLB15) and generated two models from each by using two different programs SCULPTURE and MOLREP. ... |
| 2 | 4pq9 | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4606783/ | Crystal structural basis for Rv0315, an immunostimulatory antigen and inactive beta-1, 3-glucanase of Mycobacterium tuberculosis | 2015 | W Dong, J Huang, Y Li, Y Tan, Z Shen, Y Song - Scientific , 2015 - ncbi.nlm.nih.gov | ... was solved at a resolution of 1.7 by molecular replacement using the structure of-1,3-glucanase from Mycobacterium marinum (PDB code 4PQ9) as a ... Other than the differentsize of the cavity, the overall structure of Rv0315 was similar to that of ZgLamA GH16 (Fig. ... |
| 3 | 3ke1 | 4emd, 4ed4, 4dxl, 3q8h | http://onlinelibrary.wiley.com/doi/10.1002/anie.201408487/full | Molecular Recognition in Chemical and Biological Systems | 2015 | E Persch, O Dumele, F Diederich - … Chemie International Edition, 2015 - Wiley Online Library | ... c) Cocrystal structure of ligand 12 bound to TGT (1.68 Å resolution, PDB ID: 3RR4)51 and d ...reorganization of the protein and the changes in the water network solvation occurring upon minorchanges in the ligand structures.52 Without high-resolution structural information, a ... |
| 4 | 4iv5 | - | http://www.mdpi.com/1422-0067/16/8/18836/pdf | From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases | 2015 | D Shi, NM Allewell, M Tuchman - International Journal of Molecular …, 2015 - mdpi.com | ... dodecameric holoenzyme with DHOase, were determined [50,51]. Only one eukaryotic ATCasestructure, of Trypanosoma cruzi, has been determined (PDB code: 4IV5). ... Both domains havean αβα structure with a parallel β-sheet in the center and α helices on both sides. ... |
| 5 | 3fvb | 4di0 | https://tspace.library.utoronto.ca/handle/1807/69450 | Understanding the Encapsulins | 2015 | D Radford - 2015 - tspace.library.utoronto.ca | ....The Dps-like bacterioferritin-like family was defined as the set of proteins similar to the Brucella melitensis biovar Abortus 2308 bacterioferritin [PDB accession: 3FVB] .. Lastly the rubrerythrin-like family was defined as the set of proteins similar to the Burkholderia pseudomallei rubrerythrin [PDB accession: 4DI0], and N-terminal domains of the Ferroglobus placidus DSM 10642 encapsulin ... |
| 6 | 3ief | 3knu | http://www.sciencedirect.com/science/article/pii/S0022283614005798 | Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins | 2015 | SS MacKinnon, SJ Wodak - Journal of molecular biology, 2015 - Elsevier | ... In addition, we identified protein structures in the PDB related to each member of our ... We examineddomain re-orientations in these relatives and how the quaternary structure is affected ... This allowedus to characterize the level of structural plasticity in protein families comprising ... |
| 7 | 3nrr | 3i3r | http://www.sciencedirect.com/science/article/pii/S0041010115001002 | Homology modeling, vasorelaxant and bradykinin-potentiating activities of a novel hypotensin found in the scorpion venom from Tityus stigmurus | 2015 | RJA Machado, LGM Junior, NKV Monteiro… - Toxicon, 2015 - Elsevier | ... thymidylate synthase from B. bovis with dUMP, Ralitrexed and NADP (PDB ID: 3NRR, ChainA ... Protein Data Bank are listed here in increasing order of identity: X-ray structure dihydrofolatereductase/thymidylate synthase from B. bovis at 2.35 Å resolution (PDB ID: 3I3R ... |
| 8 | 3hhe | 3uw1 | http://www.sciencedirect.com/science/article/pii/S109332631400179X | Structural modeling and docking studies of ribose 5-phosphate isomerase from Leishmania major and Homo sapiens: A comparative analysis for Leishmaniasis … | 2015 | PVSZ Capriles, LPR Baptista, IA Guedes… - Journal of Molecular …, 2015 - Elsevier | ... identity: 42%); (iii) 2F8M [29], the R5PI type A structure from Plasmodium falciparum (identity:35%) and (iv) 3HHE [30], the R5PI type A structure from Bartonella ... The alignment analyses showedthat no PDB sequence was able to align against the 20 C-terminal amino acids ... |
| 9 | 3h81 | 3myb | http://aem.asm.org/content/81/19/6558.short | The Pseudomonas aeruginosa Isohexenyl Glutaconyl Coenzyme A Hydratase (AtuE) Is Upregulated in Citronellate-Grown Cells and Belongs to the Crotonase Family | 2015 | N Poudel, J Pfannstiel, O Simon, N Walter - Applied and , 2015 - Am Soc Microbiol | ... models were constructed (one with the structure with PDB accession number 3H81 [sequenceidentity, 37.0%] and one with the structure with PDB accession number ... The stereochemistry ofthe structure was validated with the MOLPROBITY program (24) and various ... |
| 10 | 3gtd | 3tv2, 3rd8, 3rrp, 3qbp, 3ome, 3oc7, 3njb, 3njd, 3myb, 3moy, 3he2, 3h81, 4qfe | http://www.sciencedirect.com/science/article/pii/S0734975015000208 | Stereochemistry of enzymatic water addition to C= C bonds | 2015 | BS Chen, LG Otten, U Hanefeld - Biotechnology Advances, 2015 - Elsevier | ... Entry, Name (EC-number), Sources (PDB-number), Types of reaction, Cofactor, Regio- andstereoselectivity. ... sapiens (3E04) Mycobacterium abscessus (3RRP) Sinorhizobium meliloti (4HGV)Thermus thermophilus (1VDK) Rickettsia prowazekii (3GTD) Mycobacterium tuberculosis ... |