We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7U5Y | 2022 | 0 |
| 7U6R | 2022 | 0 |
| 7UG3 | 2022 | 0 |
| 7UGH | 2022 | 0 |
| 7ULH | 2022 | 0 |
| 7ULZ | 2022 | 0 |
| 7UMD | 2022 | 0 |
| 7UME | 2022 | 0 |
| 7US6 | 2022 | 0 |
| 7US9 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5dld | - | https://scripts.iucr.org/cgi-bin/paper?ir5017 | Structural characterization of a nonhydrolyzing UDP-GlcNAc 2-epimerase from Neisseria meningitidis serogroup A | 2020 | NK Hurlburt, J Guan, H Ong, H Yu, X Chen- Section F: Structural, 2020 - scripts.iucr.org | The 9 9 loop in NmSacA also contains a 310-helix, which is not observed in the E. coli structure . The structures of other epimerases with ligands bound in the active site, including those from Burkholderia vietnam- iensis ( PDB entry 5dld ; 48.7% identity; Seattle Structural |
| 2 | 5dvw | - | https://www.intechopen.com/online-first/docking-based-screening-of-cell-penetrat... | Docking-Based Screening of Cell-Penetrating Peptides with Antiviral Features and Ebola Virus Proteins as a Drug Discovery Approach to Develop a | 2021 | E Raoufi, B Bahramimeimandi- Viral, 2021 - intechopen.com | The potential reservoirs of EBOV RNA are three species of African fruit bats [3]. The genome of this virus contains a negative-strand RNA that encodes six structural and one non- structural proteins, which can be employed as potential drug targets, including transmembrane ... The structures of GP (PDBID: 5JQB), VP35 (PDBID: 3FKE), VP24 (PDBID: 4M0Q), VP30 (PDBID: 5DVW), VP40 (PDBID: 4LDB) and NP (PDBID: 4Z9P) proteins of EBOV were collected from Protein Data Bank |
| 3 | 5dvw | - | https://core.ac.uk/download/pdf/323470394.pdf | Napovedni modeli za identifikacijo potencialnih inhibitorjev razlinih proteinov virusa ebole | 2020 | V Hudi - 2020 - core.ac.uk | Monte Carlo MLR Multivariatna linearna regresija mRNA Informacijska ribonukleinska kislina NP Nukleoprotein PCA Metoda glavnih komponent PDB Podatkovna knjinica Knowledge of the viral structure gives us insight into the functioning of the virus and allows us to predict |
| 4 | 5dvw | 3tcq | http://www.worldscientific.com/doi/abs/10.1142/S1793048017500060 | Interplay Among Constitutes of Ebola Virus: Nucleoprotein, Polymerase L, Viral Proteins | 2017 | M Zhang, P He, J Su, DT Singh, H Su - Biophysical Reviews and , 2017 - World Scientific | ... interacts with the C-terminal domain of NP to stabilize the overall virion structure (shown in ... Majorfunctions of these structural proteins are elaborated in the boxes.1,10,56 (b) Crystal ... of Ebola viralproteins: NP (RCSB PDB:4ZTI)96; VP30 protein (RCSB PDB:5DVW)97; VP35 ... |
| 5 | 5dvw | - | http://journal.umpalangkaraya.ac.id/index.php/bjop/article/view/836 | Computational Drug Design against Ebola Virus Targeting Viral Matrix Protein VP30 | 2019 | A Venkatesan, L Ravichandran- Borneo Journal of, 2019 - journal.umpalangkaraya.ac.id | Protein structure preparation The protein crystal structure of Ebola VP30 protein ( PDB code: 5DVW ) with the resolution of 1.75 was retrieved from RCSB Protein Data Bank ( PDB ), a repository providing crystal structures of biotic macromolecules (Berman et al., 2000) |
| 6 | 5dvw | - | https://etd.ohiolink.edu/!etd.send_file?accession=kent1511199228856908&dispositi... | Evolutionary Trends in Viral Pathogens within and between Outbreaks | 2017 | ME Saha - 2017 - etd.ohiolink.edu | for VP35 the 3FKE and 4YPI maps were used. For the other VP proteins: maps 4LDD and 4LDB for VP40, maps 2I8B and 5DVW |
| 7 | 5dwn | - | http://jb.asm.org/content/199/13/e00125-17.short | Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex | 2017 | EJ Loveridge, C Jones, MJ Bull, SC Moody - Journal of , 2017 - Am Soc Microbiol | ... protein [37], including conservation of the bleomycin-binding regions), phosphinothricinN-acetyltransferase (36% identical to phosphinothricin N-acetyltransferase from Brucella ovis[GenBank accession number WP_006155257; PDB accession number 5DWN], with significant ... |
| 8 | 5dxd | - | http://www.ejpmr.com/admin/assets/article_issue/1506597354.pdf | HOMOLOGY MODELING AND STRUCTURAL STUDIES OF CELL WALL BINDING PROTEIN -1, 3, GLUCANASE FROM NEUROSPORA CRASSA | 2017 | KA Kumar, SK Gousia, MM Moses, JNL Latha - ejpmr.com | 5dxd .1.A 17.97 monomer HHblits X-ray 1.70 0.29 0.30 Putative beta-glucanase normalized QMEAN score (0.40) and protein size in non-redundant set of PDB structures in the and Schwede, T. Toward the estimation of the absolute quality of individual protein structure models |
| 9 | 5eks | - | https://journals.asm.org/doi/abs/10.1128/jb.00248-20 | Structural and biochemical analyses reveal that chlorogenic acid inhibits the shikimate pathway | 2020 | N Neetu, M Katiki, A Dev, S Gaur, S Tomar- Journal of, 2020 - Am Soc Microbiol | replacement method using the coordinates of chain A of DHQS enzyme from Vibrio cholerae ( PDB identifier [ID]: 3OKF Structural comparison of PaDHQS structure with its homologs closer to its homologs from A. nidulans (1SG6), V. cholerae (3OKF), A. baumannii ( 5EKS ), and H |
| 10 | 5eks | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | In-silico three dimensional structure prediction of important Neisseria meningitidis proteins. | 2021 | M Ali, M Aurongzeb, Y Rashid- Pakistan Journal of, 2021 - search.ebscohost.com | Chain A of 3-dehydroquinate Synthase from Acinetobacter Baumannii in complex with NAD+ with PDB id 5EKS (to be published) was selected as a template structure . The template had 98% query coverage and 56% sequence identity with the target sequence |