We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7S5N | 2021 | 0 |
| 7S87 | 2021 | 0 |
| 7SBJ | 2021 | 0 |
| 7SIR | 2021 | 0 |
| 7SWH | 2021 | 0 |
| 7SWK | 2021 | 0 |
| 7SY9 | 2021 | 0 |
| 7SYB | 2021 | 0 |
| 7SZP | 2021 | 0 |
| 7SZS | 2021 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tl6 | - | https://link.springer.com/chapter/10.1007/978-3-319-23497-7_13 | Basic Exploratory Proteins Analysis with Statistical Methods Applied on Structural Features | 2015 | E Del Prete, S Dotolo, A Marabotti- Mathematical Models in, 2015 - Springer | 1JP7, 1M73, 1ODK, 1PK9, 1QE5, 1TCU, 1V4N, 1VMK, 1XE3, 1Z33, 2P4S, 3KHS, 3OZE, 3SCZ, 3TL6 , 3UAV, 4D98 2. Different online and local tools have been used to extract protein structural properties from PDB files: Vadar [15], for secondary structure (also confirmed |
| 2 | 3tl6 | - | http://link.springer.com/chapter/10.1007/978-3-319-24462-4_3 | Statistical Analysis of Protein Structural Features: Relationships and PCA Grouping | 2014 | E Del Prete, S Dotolo, A Marabotti - Intelligence Methods for , 2014 - Springer | ... 1ODK, 1PK9, 1QE5, 1TCU, 1V4N, 1VMK, 1XE3, 1Z33, 2P4S, 3KHS, 3OZE, 3SCZ, 3TL6, 3UAV,4D98 ... The legend of the right refers to PDB codes (see Table 1) with the addition ... to con- sidersome structural features as putative markers of the peculiar structure-function properties ... |
| 3 | 3kw3 | - | http://scripts.iucr.org/cgi-bin/paper?S2053230X14017725 | The structure of alanine racemase from Acinetobacter baumannii | 2014 | E Davis, E Scaletti-Hutchinson - Section F: Structural , 2014 - scripts.iucr.org | ... Alanine racemase, PDB entry, Whole monomer #, N-terminal domain +, C-terminal domain , Active site ##. Alr Eco, 2rjg, 1.30 (41%), 1.32 (40%), 1.02 (43%), 0.65 (60%). Alr Bhe, 3kw3, 1.86 (29%), 1.68 (25%), 1.07 (36%), 0.91 (48%). ... |
| 4 | 3lgj | - | https://www.nature.com/articles/s41598-017-15774-y | Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34 | 2017 | E Cernooka, J Rumnieks, K Tars, A Kazaks- Scientific reports, 2017 - nature.com | Structural homologs of the ORF6 protein were identified using the Dali server ... the number of superimposed atoms were ... 59 (PDB ID: 3LGJ) and 58 (PDB ID: 3VDY) |
| 5 | 3tcq | - | https://www.mdpi.com/1422-0067/24/7/6298 | Cheminformatics-Based Study Identifies Potential Ebola VP40 Inhibitors | 2023 | E Broni, C Ashley, J Adams, H Manu, E Aikins- International Journal of, 2023 - mdpi.com | Modeller generated five models using the 3D structures of 3TCQ and 7K5L as templates. structure of the VP40 with PDB ID 1ES6 as the parent template for modelling. 1ES6s structure |
| 6 | 5jry | - | https://www.sciencedirect.com/science/article/pii/S2001037018301545 | Molecular Mechanisms of Bacterial Bioluminescence | 2018 | E Brodl, A Winkler, P Macheroux- Computational and Structural, 2018 - Elsevier | we also show stick models of the substrate analog (indole-3-acetaldehyde – blue) and the cofactor (NADP+ − grey) in the respective binding sites obtained from the superposition of the LuxC model with indole-3-acetaldehyde dehydrogenase from Pseudomonas syringae (PDB 5IUW) and from the structure of an aldehyde dehydrogenase from Burkholderia multivorans (PDB 5JRY), respectively. |
| 7 | 3tmg | - | https://www.frontiersin.org/articles/10.3389/fmicb.2018.02536/abstract | The GbsR family of transcriptional regulators: functional characterization of the OpuAR repressor | 2018 | E Bremer, S Ronzheimer, B Warmbold- Frontiers in, 2018 - frontiersin.org | the linker region, an aromatic cage is predicted as the inducer-binding site, whose envisioned architecture resembles that subtilis GbsR protein (Nau-Wagner et al., 2012); it is based on the crystal structure of the DNA-binding protein Mj223 of M. jannaschii ( PDB entry 1KU9 |
| 8 | 3uve | - | https://www.nature.com/articles/s42003-022-03684-3 | A complete nicotinate degradation pathway in the microbial eukaryote Aspergillus nidulans | 2022 | E Bokor, J mon, M Varga, A Szekeres- Communications, 2022 - nature.com | ( PDB code: 3awd) and carveol dehydrogenase CDH from Mycobacterium avium ( PDB code: 3uve HxnM shows striking structural similarity with its closest known structural homolog, the |
| 9 | 3uve | - | https://www.biorxiv.org/content/10.1101/2021.08.17.456622.abstract | Nicotinate degradation in a microbial eukaryote: a novel, complete pathway extant in Aspergillus nidulans | 2021 | E Bokor, J Amon, M Varga, A Szekeres, Z Hegedus- bioRxiv, 2021 - biorxiv.org | 372 code: 3awd) and carveol dehydrogenase CDH from Mycobacterium avium ( PDB code: 3uve model of HxnN with its closest known 426 structural homolog, FAAH1 ( PDB code: 2vya), |
| 10 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24101/full | Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria | 2012 | E Bitto, DJ Kim, CA Bingman, HJ Kim? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... domains of other proteins including glycine cleavage system transcriptional regulator GcvR (PDB id: 1u8s; unpublished data), formyltetrahydrofolate deformylase (PDB id: 3nrb, 3n0v, and 3lou; unpublished data), and phosphoserine phosphatase SerB (PDB id: 3p96).16 The ... |