We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GNN | 2009 | 1 |
| 3GMT | 2009 | 9 |
| 3GLQ | 2009 | 9 |
| 3GKA | 2009 | 11 |
| 3GK3 | 2009 | 1 |
| 3GK0 | 2009 | 2 |
| 3GE4 | 2009 | 7 |
| 3GC0 | 2009 | 4 |
| 3GBZ | 2009 | 5 |
| 3GAF | 2009 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ix6 | 4whx, 3qat | https://journals.asm.org/doi/abs/10.1128/MMBR.00029-16 | The blueprint of a minimal cell: MiniBacillus | 2016 | DR Reu, FM Commichau, J Gundlach- Microbiology and, 2016 - Am Soc Microbiol | SUMMARY Bacillus subtilis is one of the best-studied organisms. Due to the broad knowledge and annotation and the well-developed genetic system, this bacterium is an excellent for ... TABLE 2 The complete gene set of MiniBacillus thyB BSU21820 No 2.1.1.45 3IX6 Brucella melitensis |
| 2 | 3inn | 4ed4 | http://pubs.acs.org/doi/abs/10.1021/ci500553a | Extraction of Protein Binding Pockets in Close Neighborhood of Bound Ligands Makes Comparisons Simple Due to Inherent Shape Similarity | 2014 | T Krotzky, T Rickmeyer, T Fober… - Journal of chemical …, 2014 - ACS Publications | ... To set up a more challenging task with respect to conformational and structural diversity, we ... serverPISCES of the Dunbrack lab(35) was employed, which kept only PDB structures that agreed ... thesequence identity does not exceed 25%, the method of structure determination is ... |
| 3 | 3inn | - | http://pubs.acs.org/doi/abs/10.1021/bi1004206 | Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus | 2010 | A Satoh, S Konishi, H Tamura, HG Stickland? - Biochemistry, 2010 - ACS Publications | ... entry 2EJC) and the ATP complex structure of a protein annotated as PS of Brucella melitensis (PDB entries 3INN). In general, the PS protomer can be divided into two domains (N- and C-terminal domains), with the active site located at the interface of these domains. ... |
| 4 | 3iml | 3dms, 3hja, 3gtd, 3mbf, 3sth, 3s82, 3qbp, 3l0d, 3kx6, 4oh7, 4xfj, 4tu1 | http://www.tandfonline.com/doi/abs/10.1080/23312025.2017.1291877 | Investigation of intrinsic dynamics of enzymes involved in metabolic pathways using coarse-grained normal mode analysis | 2017 | SM Meeuwsen, AN Hodac, LM Adams - Cogent , 2017 - Taylor & Francis | ... (3IML), and M. avium (3S82) MATs together. The dynamics of 3IML are more similar to the ... 6) toassist in the open and closed conformations of the enzyme. Ornithine transcarbamylase (PDBcode: 4OH7; chains A and B of the homotrimer were ... Visualization of the structure ... |
| 5 | 3iml | - | http://pubs.rsc.org/doi/c5ra27938k | Structure of a thermostable methionine adenosyltransferase from Thermus thermophilus HB27 reveals a novel fold of the flexible loop | 2016 | Y Liu, W Wang, W Zhang, Y Dong, F Han, M Raza - RSC Advances, 2016 - pubs.rsc.org | ... sapiens (HsMAT, PDB code: 2P02), Burkholderia pseudomallei (BpMAT, PDB code: 3IML),Thermococcus kodakarensis ... 20 The structure of EcMAT (PDB code: 1RG9, chain A) was selectedas the ... the underlying reason for its thermostability, we solved the crystal structure of apo ... |
| 6 | 3iml | - | http://31.24.0.66/bj/452/bj4520027add.pdf | Insight into S-adenosylmethionine biosynthesis from the crystal structures of the human methionine adenosyltransferase catalytic and regulatory subunits | 2013 | N SHAFQAT, JRC MUNIZ, ES PILKA? - Biochem. J, 2013 - 31.24.0.66 | ... sequences include hMAT1A (PDB code 2OBV; Uniprot ID Q00266), hMAT2A (PDB code 2P02; Uniprot ID P31153), rMAT1A (PDB code 1O9T; Uniprot ID P13444), eMAT (PDB code 1RG; Uniprot ID P0A817) and Burkholderia pseudomallei MAT (PDB code 3IML; Uniprot ID ... |
| 7 | 3iml | 3tde, 3s82, 3rv2 | http://onlinelibrary.wiley.com/doi/10.1111/febs.12784/full | Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus | 2014 | F Wang, S Singh, J Zhang, TD Huber - FEBS , 2014 - Wiley Online Library | ... mjMAT Methanococcus jannaschii methionine adenosyltransferase. PDB Protein Data Bank. Pi phosphate. PPi diphosphate. ... To date, MAT structures from Escherichia coli [3, 4], Campylobacter jejuni [5], Burkholderia pseudomallei (PDB code 3IML), Entamoeba histolytica ... |
| 8 | 3iml | - | http://journals.iucr.org/m/issues/2014/04/00/lz5002/ | Structure and function study of the complex that synthesizes S-adenosylmethionine | 2014 | B Murray, SV Antonyuk, A Marina, SM Van Liempd - IUCrJ, 2014 - journals.iucr.org | ...(b) Superposition of apo-MAT([alpha]2)2 from Burkholderia pseudomallei (PDB entry 3iml , Baugh et al., 2013[Baugh L. et al. (2013). Plos One, 8, e53851.], in pink) with the SAMe-bound MAT([alpha]2)2 (PDB entry 2p02 in blue);... |
| 9 | 3iml | - | http://www.biomedcentral.com/1472-6807/13/22/ | Structural and functional characterisation of the methionine adenosyltransferase from Thermococcus kodakarensis | 2013 | J Schlesier, J Siegrist, S Gerhardt, A Erb? - BMC Structural Biology, 2013 - biomedcentral.com | ... for archaeal MATs. The only exception from this observation is the structure of the Burkholderia pseudomallei MAT (PDB-ID 3IML), with a less pronounced torsion of only 35?. Figure 7 Spatial arrangement of MAT monomers. ... |
| 10 | 3iml | 3tde, 3s82, 3rv2 | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.12784 | Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobussolfataricus | 2014 | F Wang, S Singh, J Zhang, TD Huber- The FEBS, 2014 - Wiley Online Library | containing a nonnative product, and cumulatively these structures add new structural insight into the analysis here are the numbers from the AdoEth bound structure ( PDB code 4L2Z). To date, MAT structures from Escherichia coli [3, 4], Campylobacter jejuni [5], Burkholderia pseudomallei (PDB code 3IML), Entamoeba histolytica (PDB code 3SO4), Mycobacterium marinum (PDB code 3RV2), Mycobacterium avium (PDB code 3S82), Mycobacterium tuberculosis (PDB code 3TDE), Thermococcus kodakarensis [6], ... |