We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TAS | 2022 | 0 |
| 7TA9 | 2022 | 0 |
| 7T93 | 2022 | 0 |
| 7T7J | 2022 | 0 |
| 2MZY | 2015 | 0 |
| 3R9Q | 2011 | 0 |
| 3QYR | 2011 | 0 |
| 2MYY | 2015 | 0 |
| 7SSQ | 2023 | 0 |
| 3P2Y | 2010 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2kwl | 2l4b, 2l3v | http://onlinelibrary.wiley.com/doi/10.1002/pro.2050/full | Acyl carrier protein structural classification and normal mode analysis | 2012 | DC Cantu, MJ Forrester, K Charov, PJ Reilly - Protein Science, 2012 - Wiley Online Library | ... the amino acid residues between two structures compared for calculations; PDB: Protein Data Bank; PKS: polyketide synthase; RMSD: root mean square deviation; ThYme: Thioester active ... Protein Data Bank (PDB) ACP1 structures 1T8K, 1X3O, 2EHS, 2EHT, and 2QNW, ACP5 ... |
| 2 | 3glq | - | http://link.springer.com/article/10.1007/s12154-016-0155-7 | Structural insight into binding mode of inhibitor with SAHH of Plasmodium and human: interaction of curcumin with anti-malarial drug targets | 2016 | DB Singh, S Dwivedi - Journal of chemical biology, 2016 - Springer | ... Structural superimposition. MatchMaker module of UCSF Chimera 1.9 was used to create asuperposition of PDB structures [14]. ... The six SAHH structure from human (1LI4), P. falciparum(1V8B), M. tuberculosis (2ZJO), B. pseudomallei (3GLQ), T. brucei (3H9U), and B ... |
| 3 | 3gqt | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jhet.3617 | Design, Synthesis, and Biological and In Silico Study of FluorineContaining Quinoline Hybrid Thiosemicarbazide Analogues | 2019 | DB Patel, KD Patel, NP Prajapati- Journal of, 2019 - Wiley Online Library | Thus, design, development, and structure modification existing drugs are necessary with highly selective potency on specific strains Entry, Code no. R 1, R 2, R 3, Product, Yield (%)a a Purified yield. 1, 8a, 4CF 3, 6CF 3, ... Figure 4c describes the interaction details of compounds 8d and 8k with PDB: 3GQT; compound 8d showed four H‐bond interactions |
| 4 | 4noz | - | http://www.sciencedirect.com/science/article/pii/S2213231717301416 | Functional and evolutionary characterization of Ohr proteins in eukaryotes reveals many active homologs among pathogenic fungi | 2017 | DA Meireles, RM Domingos, JW Gaiarsa, EG Ragnoni - Redox biology, 2017 - Elsevier | ... (A) For Ohr, 4NOZ secondary structure from Burkholderia cenocepacia ... (C) Selected Ohr-likesequences deposited in PDB database were aligned with ... For Ohr-like, secondary structure 2PN2from Psychrobacter arcticus 273-4 (Pa_Ohr_like) was used to guide the alignment. ... |
| 5 | 4xfj | - | https://cyberleninka.ru/article/n/spiralnye-parametry-regulyarnyh-spiraley-v-bel... | HELICAL PARAMETERS OF REGULAR π-HELICES IN PROTEINS (Part 2) | 2016 | D. Batkhishig, B. Mijiddorj, P. Enkhbayar, 2016 - cyberleninka.ru | to the DSSP program that is dedicated to identifying n-helices, which were seldom assigned by older versions of DSSP and STRIDE [7]. The secondary structure assignment methods 4XFJ A_68-74 PDB ID Chain_Po sition P (A) n Az (A)b r (A) Vc (A3) P (A) Identified Program |
| 6 | 3uf8 | - | http://bioinformatics.oxfordjournals.org/content/early/2015/03/22/bioinformatics... | AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction | 2015 | D Xu, L Jaroszewski, Z Li, A Godzik - Bioinformatics, 2015 - Oxford Univ Press | ... the first domain in SMT fusion Peptidyl-prolyl cis-trans isomerase (PDB ID 3uf8, chain A ... For example, the linker between the two domains in scFv-IL-1B complex (PDB ID 2kh2 ... for assembly of independently determined domains than for domains extracted from the structure of the ... |
| 7 | 3jst | - | http://www.jbc.org/content/early/2014/12/23/jbc.M114.616870.short | Interactions with the Bifunctional Interface of the Transcriptional Coactivator DCoH1 Are Kinetically Regulated | 2014 | D Wang, MW Coco, RB Rose - Journal of Biological Chemistry, 2014 - ASBMB | ... The prokaryotic and archaeal PCD are obligate dimers ((19) and pdbid 3jst, 2ebb, 1uso ... with theCCP4 program Phaser (30) using the 1.6 Å wild-type DCoH2 structure (PDB ID: 1RU0 ... asymmetricunit, forming a tetramer with a symmetry-related dimer (1). The structure is identical ... |
| 8 | 3l56 | - | http://www.hindawi.com/journals/irt/2013/645348/abs/ | 3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target | 2013 | D Vlachakis, A Karozou, S Kossida - Influenza research and treatment, 2013 - hindawi.com | ... The sequence alignment and the blastp query that followed revealed that the PA domain was available in the PDB databank. ... entry: 4ENF), and the crystal structure of the large C-terminal domain of the polymerase basic protein 2 from influenza A virus (RCSB entry: 3L56). ... |
| 9 | 4ix8 | - | https://link.springer.com/protocol/10.1007/978-1-0716-1036-7_12 | Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies | 2021 | D Suplatov, Y Sharapova, V vedas- Multiple Sequence Alignment, 2021 - Springer | etc.): 3WGB, 2W7E, 3A2B, 1IBJ, 1LKC, 1 V72, 2BKW, 2EZ2, 4IX8 , 1QZ9, 4BA5 The missing loop regions in these PDB structures were reconstructed using the MODELLER software [23] enzymes, the MATT algorithm was used to prepare the initial 3D- structure superimposition of -- This is not a duplicate of their earlier 2018 work |
| 10 | 3dmp | 3qbp, 3e5b, 3hm0 | https://www.sciencedirect.com/science/article/pii/S1570963920301515 | Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations | 2020 | D Sun, X Gong- Biochimica et Biophysica Acta (BBA)-Proteins and, 2020 - Elsevier | The structure diagram of LSTM neural network is shown in Fig. 3. (See Fig. 1, Fig Table 1. Dataset. DataSet, PDB ID 2H8N, 2JBR, 2NQO, 2Y32, 3DFQ, 3ESI, 3G7K, 3HM0, 3OHP, 3RD4, 3 V15, 1IZ1, 1JL2. 1KAM, 1NSW, 2GJD, 2R90, 2ZYZ, 3CDK, 3CO2, 3DMP , 3F6Z, 1BV4, 1YIF |