We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3G87 | 2009 | 1 |
| 3FVB | 2009 | 13 |
| 3FS2 | 2009 | 3 |
| 3FQ3 | 2009 | 7 |
| 3FDZ | 2009 | 12 |
| 3F9I | 2008 | 12 |
| 3F0G | 2008 | 7 |
| 3F0F | 2008 | 3 |
| 3F0D | 2008 | 7 |
| 3EZO | 2008 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3iml | 3n58 | http://mbio.asm.org/content/2/3/e00051-11.short | Identification and Characterization of the Chlamydia trachomatis L2 S-Adenosylmethionine Transporter | 2011 | R Binet, RE Fernandez, DJ Fisher, AT Maurelli - mBio, 2011 - Am Soc Microbiol | ... The alignment was generated using the Tcoffee expresso Web server using Arabidopsis thaliana MAT1 sequence (P23686) and the tertiary sequence of rat MAT1 (PDB ID 1O9T), E. coli MAT (PDB ID 1XRC) and Burkholderia pseudomallei MAT (PDB ID 3IML). ... |
| 2 | 3ily | - | https://www.ingentaconnect.com/contentone/ben/cpd/2018/00000024/00000014/art0001... | Virtual Screening Studies for Discovery of Novel Inhibitors of Inflammatory Process Targets | 2018 | MT Scotti, MF Alves- Current, 2018 - ingentaconnect.com | The structure -based pharmacophore models were produced with several inhibitor complexes (3PDC, 31 3ANS, 27 3ANT, 3OTQ, 3KOO, 3ILY , 3I28, 1ZD5 and 1VJ540) from the PDB databank (https://www.rcsb.org/ pdb /) [139-144] |
| 3 | 3ijp | - | http://ir.inflibnet.ac.in:8080/jspui/handle/10603/82176 | Cloning overexpression purification and characterization of DAPB gene encoding dihydrodipicolinate reductase of pseudomonas aeruginosa PAO1 | 2016 | V Anand - 2016 - ir.inflibnet.ac.in | ... preliminary crystallization reports have been published for Staphylococcus aureus (Dommarajuet al., 2010) and Bartonella henselae (PDB code 3IJP) as well. ... biosynthesis enzyme from P.aeruginosa PAOl is an essential step to finally determine its 3-D structure and can ... |
| 4 | 3ijp | - | http://www.biochemj.org/content/early/2017/11/28/BCJ20170709.abstract | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher order assembly | 2017 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2017 - biochemj.org | Cirilli, M., Zheng, RJ, Scapin, G., and Blanchard, JS (2003) The three-dimensional structures of the Structural and mutagenic analysis of relaxed nucleotide specificity Scapin, G., Reddy, SG, Zheng, R., and Blanchard, JS (1997) Three-dimensional structure 490 of Escherichia |
| 5 | 3ijp | - | http://ijib.classicrus.com/trns/81191318189978.pdf | Molecular cloning, biochemical and biophysical studies of Dihydrodipicolinate reductase of Pseudomonas aeruginosa PAO1 | 2011 | V Anand, A Gautam, D Sareen, TP Singh? - Int. J. Integ. Biol, 2011 - ijib.classicrus.com | ... Thermotoga maritima (Pearce et al., 2008) have been characterized both mechanistically and structurally while some preliminary crystallization reports have been published for Staphylococcus aureus (Dommaraju et al., 2010) and Bartonella henselae (PDB code 3IJP) as well. ... |
| 6 | 3ijp | - | http://cdn.intechopen.com/pdfs/30570/InTech-Enzymology_of_bacterial_lysine_biosy... | Enzymology of bacterial lysine biosynthesis | 2012 | C Dogovski, SC Atkinson? - Biochemistry, Prof. Deniz Ekinci (Ed. ), ISBN: 978-953-51-0076-8, 2012 - cdn.intechopen.com | ... 3.2 Structure of DHDPR 3.2.1 Subunit and quaternary structure of DHDPR The three-dimensional structure of DHDPR has been elucidated by X-ray crystallography from five diverse bacterial species, namely, Bartonella henselae, (PDB: 3IJP), E. coli (Scapin et al., 1995, 1997 ... |
| 7 | 3ijp | - | https://www.nature.com/articles/s41598-018-26291-x | Crystal structure of dihydrodipicolinate reductase (Pa DHDPR) from Paenisporosarcina sp. TG-14: structural basis for NADPH preference as a cofactor | 2018 | CW Lee, SH Park, SG Lee, HH Park, HJ Kim, HJ Park- Scientific reports, 2018 - nature.com | EcDHDPR; UniProtKB: P04036; PDB : 1DRU), B. henselae (BhDHDPR; UniProtKB: Q6G2G3; PDB : 3IJP ), A. variabilis P40110; PDB : 5EER), and M. tuberculosis (MtDHDPR; UniProtKB: P9WP23; PDB : 1YL5 The crystal structure of DPA-bound PaDHDPR was also obtained in the |
| 8 | 3ijp | 4f3y | http://scripts.iucr.org/cgi-bin/paper?pu5392 | Cloning, expression, crystallization and preliminary structural studies of dihydrodipicolinate reductase from Acinetobacter baumannii | 2013 | S Kaushik, A Singh, M Sinha, P Kaur? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... 143, 617-623.] ), Bartonella henselae (BhDHDPR; PDB entry 3ijp ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), Burkholderia thailandensis (BtDHDPR; PDB entry 4f3y ; Seattle Structural Genomics Center for Infectious Disease, unpublished ... |
| 9 | 3ijp | - | https://www.sciencedirect.com/science/article/pii/S0304416520302610 | Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus | 2021 | S Pote, S Kachhap, NJ Mank, L Daneshian- et Biophysica Acta (BBA, 2021 - Elsevier | This paper focuses on structural and mechanistic studies of DapB The structure for DapB has been determined from various bacterial species including Escherichia coli [14], Bartonella henselae [15 Fig. 2. (A) Tetrameric assembly of DapB from V. vulnificus ( PDB ID: 5TEN) |
| 10 | 3ijp | - | http://www.sciencedirect.com/science/article/pii/S1046592812001878 | Comparative Structure and Function Analyses of Native and His-Tagged forms of Dihydrodipicolinate Reductase from Methicillin-Resistant Staphylococcus aureus | 2012 | C Dogovski, SR Dommaraju, LC Small? - Protein Expression and Purification, 2012 - Elsevier | ... of DHDPR from five bacterial species have been determined by X-ray crystallography, namely from E. coli [25] and [26] (PDB ID: 1ARZ), M. tuberculosis[27] (PDB ID: 1C3V), T. maritima (PDB ID: 1VM6), Bartonella hensalae (PDB ID: 3IJP) and more recently from S. aureus COL ... |