We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DUR | 2022 | 1 |
| 8DUY | 2022 | 3 |
| 8DV0 | 2022 | 0 |
| 8DYA | 2022 | 3 |
| 8EES | 2022 | 0 |
| 8EGL | 2022 | 0 |
| 8EGM | 2022 | 0 |
| 8EGN | 2022 | 0 |
| 8EK7 | 2022 | 0 |
| 8EPS | 2022 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ids | - | https://digitalcommons.augustana.edu/biolmruber/28/ | Mrub_2052, Mrub_0628, and Mrub_2034 genes are predicted to be orthologous to b0688, b2039, and b3789 genes found in Escherichia coli, which are involved in | 2017 | JP Hartnett, D Scott - 2017 - digitalcommons.augustana.edu | (Finn et al.). Protein Data Bank ( PDB ) (Berman et. al., 2000) is a curated collection of crystalized proteins.If a PDB hit is obtained for a query sequence, then 3-D structure neighbors, Page 7. 6 PDB protein database 5IDS Glucose-1-phosphate Thymidylyltransferase |
| 2 | 5idv | - | https://www.sciencedirect.com/science/article/pii/S0969212618301710 | Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs | 2018 | I Josts, J Nitsche, S Maric, HD Mertens, M Moulin- Structure, 2018 - Elsevier | are slightly apart, rather than in contact, as seen in the closed structure (Figure 3 2005) and a single MsbA monomer (Figure 4). We imposed several structural restraints, assuming an overall confirmation as observed for P-glycoprotein (Szewczyk et al., 2015) ( PDB : 4Q9H) and |
| 3 | 5idv | - | https://scripts.iucr.org/cgi-bin/paper?mf5027 | Photocage-initiated time-resolved solution X-ray scattering investigation of protein dimerization | 2018 | I Josts, S Niebling, Y Gao, M Levantino, H Tidow- IUCrJ, 2018 - scripts.iucr.org | A total of 30 independent DAMMIF (Franke & Svergun, 2009) runs were performed to generate the initial structure pool (fit not shown). Calculated difference curves between the crystallographic dimer and monomer ( PDB codes 3b60 and 5idv ) show features similar to |
| 4 | 5idv | - | https://www.sciencedirect.com/science/article/pii/S002228601831439X | Synthesis, spectroscopic properties, crystal structure, antimicrobial properties and Molecular Docking Studies of the complex (1) 3 (C36H24MnN6) 6 (PF6). 0.5 H2O | 2018 | HEL Hamdani, MEL Amane, C Duhayon- Journal of Molecular Structure, 2018 - Elsevier | Docking studies was proceeded by taking the five receptors (The PDB id: 1E15(S 3BU2 (S. saprophiticus), 3GFX (klipsila pnumani), 1BY3 (E. coli) and 5IDV (acinetobacter baumannii determination of complex (1) confirmed the assignments of the structure from spectroscopic data |
| 5 | 5idw | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/1873-3468.12683 | Structure and characterization of a NAD(P)Hdependent carbonyl reductase from Pseudomonas aeruginosa PAO1 | 2017 | S Li, X Teng, L Su, G Mao, Y Xu, T Li, R Liu- FEBS, 2017 - Wiley Online Library | NADP binding induces structural changes including the ordering of the active site specificity loop, and the presence of small molecules The native PA4079 structure was determined by molecular replacement with phaser 14 in the phenix suite 15 using PDB entry 3WXB |
| 6 | 5idw | - | http://onlinelibrary.wiley.com/doi/10.1002/1873-3468.12683/full | Structure and characterization of a NAD (P) Hdependent carbonyl reductase from Pseudomonas aeruginosa PAO1 | 2017 | S Li, X Teng, L Su, G Mao, Y Xu, T Li, R Liu - FEBS , 2017 - Wiley Online Library | ... monomer contains a large central -sheet of seven -strands that is flanked by three -helices on one side and four -helices on the other, forming a sandwich structure (Fig. ... The closest homologue is the Burkholderia vietnamiensis oxidoreductase ( PDB ID: 5IDW ; Z score 27.2 ... |
| 7 | 5if3 | - | https://www.sciencedirect.com/science/article/pii/S1369703X18301530 | Semi-rational engineering of carbonyl reductase YueD for efficient biosynthesis of halogenated alcohols with in situ cofactor regeneration | 2018 | M Naeem, AU Rehman, B Shen, L Ye, H Yu- Biochemical Engineering, 2018 - Elsevier | Modeller 9.12 package on the basis of the crystal structure of a short-chain dehydrogenase/ reductase SDR ( PDB ID: 5if3 ) from Burkholderia amino acid residues for site directed mutagenesis, docking of the model substrate 3-bromoacetophenone into the structure of YueD |
| 8 | 5ify | - | https://www.sciencedirect.com/science/article/pii/S007961071830172X | A structural and functional perspective on the enzymes of Mycobacterium tuberculosis involved in the L-rhamnose biosynthesis pathway | 2018 | DK Dhaked, MB Divya, L Guruprasad- Progress in Biophysics and, 2018 - Elsevier | Some representative crystal structures of RmlA-D were retrieved from PDB and were compared with the models constructed The structure superposition of some known RmlAs (PDB_IDs: 1FXO, 1IIM, 1H5T, 3PKP, 5IFY and 6B5E) revealed their highly similar structures |
| 9 | 5ifz | - | https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gky1114/51... | SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for | 2018 | JM Dana, A Gutmanas, N Tyagi, G Qi- Nucleic acids, 2018 - academic.oup.com | 5.3.1.34 D-erythrulose 4-phosphate isomerase Q9ZB26 99% 5ifz 5.3.1.6 Ribose-5 of the protein sequence space 40-fold, expanding the applicability of structure -based an positions from Ensembl enables a more direct cross-referencing of genomic data from PDB structures |
| 10 | 5ig2 | 3tjr | https://search.proquest.com/openview/6df7bf07391cd00cac2afea7f02e6375/1?pq-origs... | Structural Genomics of Infectious Agents | 2021 | JS Alenazi - 2021 - search.proquest.com | 4 1.3.5 Deposition of Structure in PDB ..... 4 identity to SDR from B.phymatum ( 5ig2 ) .... 45 S.3.2 Targeted approach of structure genomics can be applied to select the biologically important proteins |