We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SD3 | 2022 | 0 |
| 5SD2 | 2022 | 0 |
| 5SD1 | 2022 | 0 |
| 5SD0 | 2022 | 0 |
| 3L0D | 2009 | 0 |
| 5SCZ | 2022 | 0 |
| 2MYY | 2015 | 0 |
| 2MRL | 2014 | 0 |
| 5SCY | 2022 | 0 |
| 3JS9 | 2009 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4iuj | 4p9a | http://search.proquest.com/openview/e042d9cdc035342db038fc10db68a8fe/1?pq-origsi... | Computer-Aided Drug Discovery and Protein-Ligand Docking | 2015 | H Li - 2015 - search.proquest.com | ... In addition to PAC-PB1N structures, two apo crystal structures of PAC in the absence of PB1 have been reported recently [322]. The first is a 1.9Å resolution structure of H1N1 PAC (PDB ID: 4IUJ). The second is a 2.2Å resolution structure of H7N9 PAC (PDB ID: 4P9A)... |
| 2 | 3uam | - | http://www.ir.juit.ac.in:8080/jspui/bitstream/123456789/16581/1/SP13412_RADHIKA%... | Computational Studies on Substrate Specificity in Lytic Polysaccharide Monooxygenases | 2018 | R Arora, RM Yennamalli - 2018 - ir.juit.ac.in | 4ALS, 4ALT), Burkholderia pseudomallei CBM33 ( PDB ID: 3UAM ) [10], Bacillus coelicolor CBM2 ( PDB ID: 4OY7), Cellvibrio japonicas CBP33 ( PDB ID: 5FJQ). Page 17. 3 1.5 LPMO and substrate interactions Due to the binding of copper LPMO structure gets stabilized |
| 3 | 3h81 | 3njd, 3qk8, 3qka, 3q1t, 3pe8, 3p85, 3p5m, 3ome, 3oc7, 3myb, 3moy, 3he2 | http://iris.lib.neu.edu/chemistry_diss/57/ | Computational studies of enzyme function and dynamics | 2012 | P Yin - 2012 - iris.lib.neu.edu | ... Page 20. 19 List of Abbreviations Abbreviation Meaning CSA Catalytic Site Atlas PDB Protein Data Bank THEMATICS Theoretical Microscopic Titration Curves POOL Partial Order Optimal Likelihood ? Angstr?ms ?C Degrees Celsius ESR Electron Spin Resonance NMR ... |
| 4 | 3oc6 | - | https://scholarworks.iupui.edu/handle/1805/7949 | Computational protein design: assessment and applications | 2015 | Z Li - 2015 - scholarworks.iupui.edu | ... 53 xiii Page 14. Figure 3.8 Superposition of the target structures ( PDB ID 3PTE and 1B1U, cyan) ... These interactions are utilized in protein structure prediction and protein design. ... structural topology and function through evolution. Experimental techniques, such as ... |
| 5 | 5ha4 | - | https://kronika.ac/wp-content/uploads/10F.pdf | Computational modelling, molecular docking, and molecular dynamics simulation studies of Enterococcus faecalis diaminopimelate epimerase | 2024 | J Chaudhary, P Sharma, N Singh, VK Srivastava - kronika.ac | .nlm.nih.gov] and converted to PDB format using Pymol software. of EfDapF was opened as PDB format, and polar hydrogen Co-crystal structure of DapF from C.glutamicum ... The available crystal structures of DapF from different organisms such as E.coli [PDB entry: 4IJZ], Bacillus anthracis [PDB entry: 2OTN], Acinetobacter baumannii [PDB entry: 5HA4], |
| 6 | 3eoo | - | http://is.muni.cz/th/256262/fi_m/thesis.pdf | Computational Methods for Detecting Ligand Accessible Pathways | 2012 | L Pravda - 2012 - is.muni.cz | ... Regarding the development of computers and the rapid growth of data in worldwide databases such as the Protein Data Bank [1], there have been demands on partial substitution of chemical experiment by computational models. ... |
| 7 | 3fdz | 3ezn | http://search.proquest.com/openview/4de212650c142a0818d74dc9ee7da4f8/1?pq-origsi... | Computational methods & forcefields for protein design, structure prediction, & refinement with natural & modified amino acids | 2015 | GA Khoury - 2015 - search.proquest.com | ... These were assessed by aligning the modied and unmodied structures containedinthe PDB with each other. (B) Structural similarity between the unmodied structure(U-PDB) and states of unmodied structure simulation (S1). ... |
| 8 | 6d8w | 6n41 | https://www.tandfonline.com/doi/abs/10.1080/21645515.2019.1653743 | Computationally optimized broadly reactive vaccine based upon swine H1N1 influenza hemagglutinin sequences protects against both swine and human isolated | 2019 | AL Skarlupka, SO Owino- Human vaccines &, 2019 - Taylor & Francis | The known crystal structure were used for A/California/07/2009 ( PDB accession: 3lzg23) and A/Swine/Indiana/P12439/2000 templates were chosen for model building.29 The crystal struc- tures of A/Jiangsu/ALSI/2011 (H1N1) HA ( PDB accession: 6d8w ) was selected |
| 9 | 7sof | - | https://www.cell.com/immunity/fulltext/S1074-7613(25)00178-5 | Computationally designed proteins mimic antibody immune evasion in viral evolution | 2025 | N Youssef, S Gurev, F Ghantous, KP Brock, JA Jaimes- Immunity, 2025 - cell.com | Figure 3... . The impact of K147 mutations can be seen for NTD antibody S2X303, with interactions to N65, D50, and Y31 on the antibody (PDB: 7SOF). |
| 10 | 3rr2 | - | http://onlinelibrary.wiley.com/doi/10.1002/minf.201200174/full | Computational Insights into the Mechanism of Inhibition of OASS-A by a Small Molecule Inhibitor | 2013 | A Bruno, L Amori, G Costantino - Molecular Informatics, 2013 - Wiley Online Library | ... Table 1. List of OASS structures reported in PDB. PDB. Resolution. Organism. 1OAS. 2.20. Salmonella typhimurium. 1D6S. 2.30. Salmonella typhimurium. 1FCJ. ... 3IQH. 1.90. Haemophilus influenzae. 3IQI. 1.70. Haemophilus influenzae. 3RR2. 1.95. Mycobacterium marinum. 3T4P ... |