We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8FUY | 2023 | 0 |
| 8G0R | 2023 | 0 |
| 8G0S | 2023 | 1 |
| 8G0T | 2023 | 1 |
| 8G0U | 2023 | 0 |
| 8G0V | 2023 | 0 |
| 8SA7 | 2023 | 0 |
| 8SA8 | 2023 | 0 |
| 8SA9 | 2023 | 0 |
| 8SAA | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5k0s | - | https://www.jbc.org/article/S0021-9258(21)00446-4/abstract | Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium | 2021 | GF Mercaldi, M de Oliveira Andrade- Journal of Biological, 2021 - ASBMB | In addition, XcMetRS was compared with MetRS1 enzymes in complex with dual-site inhibitors from Trypanosoma brucei (PDB code: 4EGA) (48, 67), Brucella melitensis (PDB code: 5K0S) (35, 68), and S. aureus (PDB code: 4QRD) |
| 2 | 5k85 | - | https://www.sciencedirect.com/science/article/pii/S0022283619303092 | Structures of 2-Hydroxyisobutyric Acid-CoA Ligase Reveal Determinants of Substrate Specificity and Describe a Multi-Conformational Catalytic Cycle | 2019 | M Zahn, N Kurteva-Yaneva, J Schuster, U Krug- Journal of molecular, 2019 - Elsevier | The substrate specificity of HCL corresponds well to the adenylate-forming active-site architecture ... This is in contrast to other ANL ligase structures, where the CoA or acyl-CoA molecules adopt more stretched conformations, for example, in the thioester-forming conformations of bacterial [38] and fungal acetyl-CoA synthetase (PDB ID: 5K85), |
| 3 | 5k85 | 5u29 | https://aaltodoc.aalto.fi/items/ef5fbad3-e949-4f46-8925-8ec058ca3b0b | Investigating the substrate promiscuity of acetyl-CoA synthetase from A. ethanivorans through a structural approach | 2025 | M Nikkanen - 2025 - aaltodoc.aalto.fi | Analogous and similarly spatially aligned residues residues seem to have the same function in Acs structures with PDB accession numbers 5u29 and 5k85 (figure 3) [27]. |
| 4 | 5k85 | 5ifi | https://www.nature.com/articles/s41467-020-14301-4 | ProtCID: A data resource for structural information on protein interactions | 2020 | Q Xu, RL Dunbrack- Nature communications, 2020 - nature.com | While the structure of full-length activated PAH has not been determined, a recent structure of the ACT domain of J9VFT1_CRYNH, E5XP76_9ACTN) and two common entries ( PDB : 5IFI [https://doi.org/10.2210/pdb5IFI/ pdb ] and 5K85 [https://doi.org/10.2210/pdb5K85/ pdb ]) |
| 5 | 5k85 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/bio.3952 | Selective inhibition of Zophobas morio (Coleoptera: Tenebrionidae) luciferaselike enzyme luminescence by diclofenac and potential suitability for lightoff | 2020 | MC Carvalho, A Tomazini, RA Prado- Luminescence, 2020 - Wiley Online Library | tertiaricarbonis PDB file ID: 6HE0, Cryptococcus neoformans PDB file ID: 5K85 , Salmonella typhimurium PDB file ID: 5JRH) indicated that, among the five binding sites, that of CoA was structure and function prediction. Nat Protoc 2010; 5: 25-738. 49 |
| 6 | 5k9f | - | https://www.nature.com/articles/s41419-025-08070-5 | TRIM17 promotes the progression of osteosarcoma by regulating PDK1 m6A modification-mediated AKT/mTOR pathway activation through ubiquitination of FTO | 2025 | W Liu, D Zheng, X Huang, Z Wei, Z Wei, W Guo- Cell death & disease, 2025 - nature.com | Download the three-dimensional structures of TRIM17 (ID: 6Z08) and FTO (ID: 5K9F ) from the PDB database, and remove the ligands and water molecules. The amino acid residues |
| 7 | 5kak | - | https://books.google.com/books?hl=en&lr=&id=x6RMDwAAQBAJ&oi=fnd&pg=PR8&dq=%225KA... | Protein-protein and domain-domain interactions | 2018 | P Kangueane, C Nilofer - 2018 - books.google.com | 1.10) structures It is important to under- stand the physical and chemical features of amino acids to understand protein folding, structure , function, and 1.4 A covalent bond is illustrated using cysteine with corresponding bond length 1.5 Structural Motifs Proteins are made of |
| 8 | 5kha | 4f4h | http://www.jbc.org/content/early/2018/03/26/jbc.RA118.002241.short | Kinetics and structural features of dimeric Gln-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites | 2018 | ARS Santos, ECM Gerhardt, VR Moure- Journal of Biological, 2018 - ASBMB | -Proteobacterium Burkholderia thailandensis ( PDB 4F4H) and from the -Proteobacterium Acinetobacter baumannii ( PDB 5KHA ) of dimeric NadE2Gln Given the availability of a 1.7 resolution structure of dimeric NadE2Gln from B. thailandensis ( PDB 4F4H) obtained |
| 9 | 5koi | - | https://www.mdpi.com/2077-0375/13/6/568 | The Alternating Access Mechanism in Mammalian Multidrug Resistance Transporters and Their Bacterial Homologs | 2023 | SA Badiee, UH Isu, E Khodadadi, M Moradi- Membranes, 2023 - mdpi.com | By exploring the structural and functional features of PDB files for each protein by resolution, starting with higher-resolution structures and progressing to lower-resolution structures Table 1. Available PDB files for MRP1, Pgp, Sav1866, and MsbA transporter proteins. ... 5KOI [59] 3.85 Å X-ray |
| 10 | 5koi | - | https://www.sciencedirect.com/science/article/pii/S1875536421600444 | Bufotenine and its derivatives: synthesis, analgesic effects identification and computational target prediction | 2021 | Z Chao, C Min, SUN Shan-Liang, W Jiao-Jiao- Chinese Journal of, 2021 - Elsevier | Class Target PDBa Glideb MMGBSA Class Target PDB Glide MMGBSA Class Target PDB Glide MMGBSA mGLuR5 4OO9 0.52 37.15 GLP1 3IOL 4.50 23.75 NaV1.7 5KOI 2.85 25.53 silver chlor- ide is added for substitution to obtain a stable structure of compound 6 with |