We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5HA4 | 2016 | 10 |
| 3GAF | 2009 | 10 |
| 5IDV | 2016 | 10 |
| 3K14 | 2009 | 10 |
| 5UPG | 2017 | 10 |
| 4NCX | 2014 | 10 |
| 4DZ4 | 2012 | 10 |
| 7LXX | 2021 | 10 |
| 3JVH | 2009 | 10 |
| 3IDO | 2009 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ify | - | https://www.sciencedirect.com/science/article/pii/S007961071830172X | A structural and functional perspective on the enzymes of Mycobacterium tuberculosis involved in the L-rhamnose biosynthesis pathway | 2018 | DK Dhaked, MB Divya, L Guruprasad- Progress in Biophysics and, 2018 - Elsevier | Some representative crystal structures of RmlA-D were retrieved from PDB and were compared with the models constructed The structure superposition of some known RmlAs (PDB_IDs: 1FXO, 1IIM, 1H5T, 3PKP, 5IFY and 6B5E) revealed their highly similar structures |
| 2 | 4wny | - | https://www.sciencedirect.com/science/article/pii/S0065216417300424 | Twenty-Five Years of Investigating the Universal Stress Protein: Function, Structure, and Applications | 2018 | AC Vollmer, SJ Bark- Advances in applied microbiology, 2018 - Elsevier | Since the initial discovery of universal stress protein A (UspA) 25 years ago, remarkable advances in molecular and biochemical technologies have revolutionized our understanding of biology. Many studies using these technologies have focused on characterization of the uspA gene and Usp-type proteins. These studies have identified t... Universal stress protein 4WNY B. pseudomallei Abendroth, Dranow, Lorimer, and Edwards (2008) |
| 3 | 4wec | - | https://www.sciencedirect.com/science/article/pii/S0045653518315108 | Quantitative proteomic and transcriptional analyses reveal degradation pathway of -hexachlorocyclohexane and the metabolic context in the actinobacterium | 2018 | PE Sineli, HM Herrera, SA Cuozzo, JSD Costa- Chemosphere, 2018 - Elsevier | Template crystal structures , obtained from PDB data bank (RCSB- PDB ), were 3A76 for dehydrochlorinase, 4HZG for haloalkane dehalogenase and 4WEC for short-chain alcohol dehydrogenase. Protein structures were visualized using PyMol |
| 4 | 5u4s | - | https://www.sciencedirect.com/science/article/pii/S0041008X20305093 | Species-specific differences in the inhibition of 11-hydroxysteroid dehydrogenase 2 by itraconazole and posaconazole | 2020 | SG Inderbinen, M Zogg, M Kley, M Smieko- Toxicology and Applied, 2020 - Elsevier | models were based on the template structure of 11-HSD1 (various PDB IDs), one model on the template structure of 3-oxoacyl-[acyl-carrier-protein] reductase ( PDB ID: 3u9l) and finally one on the template structure of a putative short chain dehydrogenase ( PDB ID: 5u4s ) |
| 5 | 6ns0 | - | https://www.sciencedirect.com/science/article/pii/S0039128X21001240 | Synthesis of erythrodiol C-ring derivatives and their activity against Chlamydia trachomatis | 2021 | O Kazakova, L Rubanik, A Lobov, N Poleshchuk- Steroids, 2021 - Elsevier | activity, for example, the presence of ,-unsaturated system in the structure of CDDO (2-cyano-3,12-diooxoolean-1,9-dien-28-oic acid) has a sufficient influence on anti-inflammatory, anti-diabetic nephropathy, and cytotoxic activities [14], [15] Figure 1. Structures of oleanolic |
| 6 | 6q04 | - | https://www.sciencedirect.com/science/article/pii/S0024320521007608 | Evolutionary selectivity of amino acid is inspired from the enhanced structural stability and flexibility of the folded protein | 2021 | SJA Rao, NP Shetty- Life Sciences, 2021 - Elsevier | Evolutionary selectivity of amino acid is inspired from the enhanced structural stability and flexibility of the folded protein certain positions is governed by a well-orchestrated feedback mechanism, which follows increased stability and flexibility in the folded structure compared to |
| 7 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |
| 8 | 6amz | - | https://www.sciencedirect.com/science/article/pii/S002251932030028X | Identification of potential therapeutic targets in Neisseria gonorrhoeae by an in-silico approach | 2020 | P Tanwer, SRR Kolora, A Babbar, D Saluja- Journal of Theoretical, 2020 - Elsevier | The obtained protein. pdb file was overlapped with the homologous protein whose crystal structure ( 6AMZ from Acinetobacter baumannii) was obtained from RCSB database (Berman et al., 2000). Both protein structures were overlapped using Pymol (Alexander et al., 2011) to |
| 9 | 4j07 | - | https://www.sciencedirect.com/science/article/pii/S002235491830306X | Biomedical Applications of Lumazine Synthase | 2018 | Y Wei, P Kumar, N Wahome, NJ Mantis- Journal of, 2018 - Elsevier | Oligomeric State of LS, Quaternary Structure , Organism, PDB ID 16, 17, 18 Mycobacterium leprae 19 S. cerevisiae 20 Schizosaccharomyces pombe 21, 1DI0 2F59; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV |
| 10 | 5u9p | - | https://www.sciencedirect.com/science/article/pii/S0022286023007160 | Synthesis, crystallographic and spectroscopic investigation, chemical reactivity, hyperpolarizabilities and in silico molecular docking study of (Z)-2N-(tert | 2023 | FZ Boudjenane, F Triki-Baara, N Boukabcha- of Molecular Structure, 2023 - Elsevier | In Table 9, binding affinities for various poses in the 5U9P inhibitor of the investigated ligand between the molecule and the residues of the proteins 5U9P , 4HP8, 4Z9X, 1VL8, 4IBO and |