We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7U56 | 2022 | 0 |
| 7U5F | 2022 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5Y | 2022 | 0 |
| 7U6R | 2022 | 0 |
| 4LNE | 2013 | 0 |
| 7UG3 | 2022 | 0 |
| 7UGH | 2022 | 0 |
| 7ULH | 2022 | 0 |
| 7ULZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v7o | 3tcq | http://f1000research.com/articles/3-251/v1 | Characterizing alpha helical properties of Ebola viral proteins as potential targets for inhibition of alpha-helix mediated protein-protein interactions | 2014 | S Chakraborty, B Rao, B Asgeirsson… - …, 2014 - f1000research.com | ... 1EBO,2EBO,3VE0,3CSY.. 2I8B,3V7O 3FKE,3L25,4LG2,4IBK... ... A PDB database search usingthe keyword 'Ebola' generate 146 single chained proteins, which were analyzed using DefineSecondary Structure of Proteins, resulting in 758 alpha helices (ALPHA.zip). ... |
| 2 | 3fvb | - | http://dr.library.brocku.ca/handle/10464/5755 | Towards reverse engineering of Photosystem II: Synergistic Computational and Experimental Approaches | 2014 | A Mahboob - 2014 - dr.library.brocku.ca | ... 62 3.4.3. Comparison of water channels found in this work to channelsobtained from static structures ..... ... 19 Figure 1.2 Structure of PSII dimershowing subunits CP47,D1,D2,cyt b559,CP43,cyt c550 ... |
| 3 | 3o2e | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.12649/full | Morphogenes bolA and mreB mediate the photoregulation of cellular morphology during complementary chromatic acclimation in Fremyella diplosiphon | 2014 | SP Singh, BL Montgomery - Molecular microbiology, 2014 - Wiley Online Library | ... Hypo, gene encodes hypothetical protein. C. Putative structure of F. diplosiphon BolA (in green) modelled on the Babesia bovis BolA structure (in red, PDB:3O2E; Abendroth et al., 2011) using two independent protein structure prediction servers, ie I-TASSER and PHYRE. ... |
| 4 | 3grp | 3f9i | http://dx.plos.org/10.1371/journal.pone.0105751 | BdcA, a Protein Important for Escherichia coli Biofilm Dispersal, Is a Short-Chain Dehydrogenase/Reductase that Binds Specifically to NADPH | 2014 | DM Lord, AU Baran, TK Wood, W Peti, R Page - PloS one, 2014 - dx.plos.org | ... Table 2. BdcA structural homologs as determined by DALI and FFAS. ... Indeed, the same loopsare disordered in the protein whose structure is most similar to BdcA, Bartonella henselae FabG(PDB 3GRP; Table 2) and Rickettsia prowazekii FabG (PDB 3F9I; Table 2) [14]. ... |
| 5 | 3eiz | 3i4t | http://www.turkjbiochem.com/2014/435-442.Ek2.pdf | High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions | 2014 | SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com | ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ... |
| 6 | 3r8c | 4em8, 3te8 | http://repositories.lib.utexas.edu/handle/2152/24852 | Scoring functions for protein docking and drug design | 2014 | S Viswanath - 2014 - repositories.lib.utexas.edu | ... are also found in cell membranes, which is a hydrophobic (non-polar and water-repelling) environment. Figure 1.1 shows two complexes in the Protein Data Bank (PDB)[6, 7]. Figure 1.1 (a) is a structure of soluble complex (PDB ID 3hct) [6], which is a structure of ... |
| 7 | 3q8h | - | http://pubs.acs.org/doi/abs/10.1021/jm5010978 | Development of Inhibitors of the 2 C-Methyl-d-erythritol 4-Phosphate (MEP) Pathway Enzymes as Potential Anti-Infective Agents | 2014 | T Masini, AKH Hirsch - Journal of medicinal chemistry, 2014 - ACS Publications | ... ofhe cocrystal structure of 81 with B. pseudomallei IspF (PDB code 3Q8H, Figure 4) shows that there is no direct interaction of 81 with the catalytic Zn2+ cation, but the presence of the bicyclic aromatic ring, engaged in hydrophobic interactions, probably compensates for this lack, resulting in a strong affinity of 81 or B. pseudomallei IspF. ... |
| 8 | 3ido | 3jvi | http://www.sciencedirect.com/science/article/pii/S0006291X14010183 | Atomic resolution crystal structure of< i> Vc</i> LMWPTP-1 from< i> Vibrio cholerae</i> O395: insights into a novel mode of dimerization in the Low molecular Weight | 2014 | S Nath, R Banerjee, U Sen - Biochemical and Biophysical Research , 2014 - Elsevier | ... Several structures of LMWPTP from eukaryotic organism such as human- HCPTPA (PDB: 5PNT) [4], bovine BPTPA (PDB: 1Z12) [5], mouse RPTPA (PDB: 2P4U) [6], yeast LTP1 (PDB: 1D1P) [7] and protozoan parasite Entameoba histolytica EhPtp (PDB: 3IDO) [8] are ... |
| 9 | 3iml | 3tde, 3s82, 3rv2 | http://onlinelibrary.wiley.com/doi/10.1111/febs.12784/full | Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus | 2014 | F Wang, S Singh, J Zhang, TD Huber - FEBS , 2014 - Wiley Online Library | ... mjMAT Methanococcus jannaschii methionine adenosyltransferase. PDB Protein Data Bank. Pi phosphate. PPi diphosphate. ... To date, MAT structures from Escherichia coli [3, 4], Campylobacter jejuni [5], Burkholderia pseudomallei (PDB code 3IML), Entamoeba histolytica ... |
| 10 | 4g6z | 4gri | http://scripts.iucr.org/cgi-bin/paper?S2053230X14010723 | Preliminary X-ray crystallographic analysis of an engineered glutamyl-tRNA synthetase from Escherichia coli | 2014 | N Chongdar, S Dasgupta, AB Datta - Section F: Structural , 2014 - scripts.iucr.org | ... S. & Yokoyama, S. (2010). Acta Cryst. D66, 813-820.] ). In addition, crystal structures of GluRS from Burkholderia thailandensis (PDB entry 4g6z ; Baugh et al., 2013 [Baugh, L. et al. (2013). PLoS One, 8, e53851.] ) and Borrelia ... |