We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SCW | 2022 | 0 |
| 5SCV | 2022 | 0 |
| 4MG4 | 2013 | 0 |
| 7UMD | 2022 | 0 |
| 4MI2 | 2013 | 0 |
| 7UME | 2022 | 0 |
| 7US6 | 2022 | 0 |
| 7US9 | 2022 | 0 |
| 7U0U | 2022 | 0 |
| 7U0T | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o2d | - | http://scripts.iucr.org/cgi-bin/paper?nw5044 | Crystal structure of the N-terminal anticodon-binding domain of the nondiscriminating aspartyl-tRNA synthetase from Helicobacter pylori | 2017 | C Songsiriritthigul, S Suebka, CJ Chen - Section F: Structural , 2017 - scripts.iucr.org | ... 4a), similar to the positions of the Pro82 residue in the S. tokodaii ND- AspRS structure (Sato etal., 2007). ... Structural comparison of ND-AspRS1104 from H. pylori with those from M. smegmatis(PDB entry 4o2d; Baugh et al., 2015) and P. aeruginosa (PDB entry 4wj4 ... |
| 2 | 6wps | - | https://academic.oup.com/glycob/advance-article-abstract/doi/10.1093/glycob/cwab... | Modernized uniform representation of carbohydrate molecules in the Protein Data Bank | 2021 | C Shao, Z Feng, JD Westbrook, E Peisach- , 2021 - academic.oup.com | glycan structures (eg, SARS-CoV-2 protein-carbohydrate complex PDB ID 6WPS ) and the partnership is committed to maintaining consistency and accuracy across the PDB archive by regularly reviewing data processing procedures and carrying out structure remediation efforts |
| 3 | 3tv2 | - | http://onlinelibrary.wiley.com/doi/10.1002/cmdc.201390041/full | Inside Cover: CONFECT: Conformations from an Expert Collection of Torsion Patterns (ChemMedChem 10/2013) | 2013 | C Sch?rfer, T Schulz-Gasch, J Hert? - ?, 2013 - Wiley Online Library | ... frequency histograms (top left). One of the bioactive conformations of AMP is shown in the binding site of the protein from PDB complex 3TV2 (bottom right). For more details, see the Full Paper by Matthias Rarey et al. on p. 1690 ff. ... |
| 4 | 3ke1 | - | http://pubs.acs.org/doi/full/10.1021/jm3016816 | Torsion Angle Preferences in Druglike Chemical Space: A Comprehensive Guide | 2013 | C Sch?rfer, T Schulz-Gasch, HC Ehrlich? - Journal of medicinal ?, 2013 - ACS Publications | ... The growing number of entries in the Cambridge Structural Database (CSD)(19) and the ProteinData Bank (PDB)(20) allow derivation of more and more reliable and specific rules, and efficient tools exist to do this.(21, 22) Here we present ... PDB entry 3ke1(39) exemplifies ... |
| 5 | 5umh | - | https://scholarcommons.sc.edu/etd/4126/ | Structural and Functional Studies of Proteins from the Agricultural Pests Tetranychus Urticae and Aspergillus Fumigatus | 2017 | C Schlachter - 2017 - scholarcommons.sc.edu | Structural homologs of TuDioxygenase identified by the Dali server [51] were dioxygenases such as: SACTE_2871 (PDB code 4ILT, 153/155 residues aligned, RMSD 1.8 Å); catechol 1,2-dioxygenase from Burkholderia multivorans (PDB code 5UMH, 167/307 residues aligned |
| 6 | 5umh | 5vxt | https://www.sciencedirect.com/science/article/pii/S0965174818303643 | Structural and functional characterization of an intradiol ring-cleavage dioxygenase from the polyphagous spider mite herbivore Tetranychus urticae Koch | 2018 | CR Schlachter, L Daneshian, J Amaya- Insect biochemistry and, 2018 - Elsevier | Here, we have determined the spectroscopic, structural and metabolic properties of TuIDRCD, the first arthropod ID-RCD used for determination, refinement, and validation of mTuIDRCD structure ; however, in this case the structure of mbp-(t48)TuIDRCD ( PDB code: 5VG2 |
| 7 | 4eqy | - | http://www.ingentaconnect.com/content/ben/cpd/2013/00000019/00000036/art00013 | Lipid A Biosynthesis of Multidrug-Resistant Pathogens-A Novel Drug Target | 2013 | CR Lee, J Hun Lee, B Chul Jeong? - Current pharmaceutical design, 2013 - ingentaconnect.com | ... (B) Structure of Burkholderia thai- landensis LpxC homotrimer (PDB ID, 4EQY). This structure shows that the catalytic residue (red) and the substrate-binding residues (blue) clustered around the hydrophobic cleft located between adjacent monomers. ... |
| 8 | 4jwp | - | https://www.nature.com/articles/s41467-024-49952-0 | Acetyl-CoA synthetase activity is enzymatically regulated by lysine acetylation using acetyl-CoA or acetyl-phosphate as donor molecule | 2024 | C Qin, LG Graf, K Striska, M Janetzky, N Geist- Nature, 2024 - nature.com | structure of Ribosomal-protein-alanine N-acetyltransferase from Brucella melitensis solved in complex with Acetyl-CoA ( PDB : 4JWP The resulting structural ensembles reveal that acetyl- |
| 9 | 6auj | 3gwc, 3ix6 | https://www.mdpi.com/1420-3049/24/8/1638 | Targeting Methyltransferases in Human Pathogenic Bacteria: Insights into Thymidylate Synthase (TS) and Flavin-Dependent TS (FDTS) | 2019 | C Pozzi, L Lopresti, G Tassone, S Mangani- Molecules, 2019 - mdpi.com | This review is aimed to summarize the current understanding of structure and function of bTSs and FDTSs and the recent id 1F4B [17]), Brucella melitensis (BmTS; PDB id 3IX6, unpublished research), and Elizabethkingia anophelis (EaTS; PDB id 6AUJ , unpublished research |
| 10 | 3kzx | 3p96 | https://open.bu.edu/handle/2144/15107 | Sequence-and structure-based approaches to deciphering enzyme evolution in the Haloalkonoate Dehalogenase superfamily | 2014 | C Pandya - 2014 - open.bu.edu | ... , all , + and /20. Importantly, ~10% of domain combinations in the Protein Data Bank(PDB) are domain insertions. ... It performs structure-based alignment and secondary-structure comparison to identify conserved and inserted secondary structural elements. ... |