We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 2LWK | 2012 | 31 |
| 2LPD | 2012 | 1 |
| 2LOL | 2012 | 5 |
| 2LKY | 2011 | 5 |
| 2LHJ | 2011 | 0 |
| 2LBB | 2011 | 5 |
| 2L4B | 2010 | 6 |
| 2KZ0 | 2010 | 6 |
| 2KWL | 2010 | 9 |
| 2KOK | 2009 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ido | 3jvi | http://www.sciencedirect.com/science/article/pii/S0006291X14010183 | Atomic resolution crystal structure of< i> Vc</i> LMWPTP-1 from< i> Vibrio cholerae</i> O395: insights into a novel mode of dimerization in the Low molecular Weight | 2014 | S Nath, R Banerjee, U Sen - Biochemical and Biophysical Research , 2014 - Elsevier | ... Several structures of LMWPTP from eukaryotic organism such as human- HCPTPA (PDB: 5PNT) [4], bovine BPTPA (PDB: 1Z12) [5], mouse RPTPA (PDB: 2P4U) [6], yeast LTP1 (PDB: 1D1P) [7] and protozoan parasite Entameoba histolytica EhPtp (PDB: 3IDO) [8] are ... |
| 2 | 3i4t | 4dxl, 5v6d, 6c0e, 5tt0, 5ts3, 3ld9, 6b1p, 4h3z, 5ts2, 5cm7, 6c6b, 6b9u, 3und | https://digitalcommons.ncf.edu/theses_etds/5689/ | COMPARATIVE ANALYSIS OF CHARGE DISTRIBUTIONS IN HOMOLOGOUS THERMOPHILIC AND MESOPHILIC PROTEINS | 2019 | C Galvin - 2019 - digitalcommons.ncf.edu | the charge distributions in high quality crystal structures of 104 thermophilic and 118 mesophilic ( PDB entry 2CYA). Shown in cyan is a mesophilic homologue from humans ( PDB entry |
| 3 | 3i4e | 3eol, 3p0x, 3e5b, 3oq8 | https://ubir.buffalo.edu/xmlui/handle/10477/79369 | Mechanistic Insights into the Catalytic Mechanism and Inhibition of Mycobacterium Tuberculosis Isocitrate Lyase | 2019 | S Ray - 2019 - ubir.buffalo.edu | an attractive target for drug development. 1.4.3 Structure of ICL Aspergillus nidulans [ PDB ID: 1DQU],67 M. tuberculosis [ PDB ID: 1F61, 1F8I, 1F8M, 5DQL],68- 69 Escherichia coli [ PDB ID:1IGW]70, Burkholderia pseudomallei [ PDB ID: 3I4E (paper |
| 4 | 3i4e | 3p0x | https://www.sciencedirect.com/science/article/pii/S0006291X20318970 | Biochemical properties and crystal structure of isocitrate lyase from Bacillus cereus ATCC 14579 | 2020 | SH Lee, D Ki, S Kim, IK Kim, KJ Kim- Biochemical and Biophysical, 2020 - Elsevier | 2.5. Structure determination of BcICL. The structure of BcICL was determined using the molecular replacement method with the CCP4 version of MOLREP [24]. The structure of Isocitrate lyase from Burkholderia pseudomallei ( PDB code 3I4E ) was used as a search model |
| 5 | 3i4e | - | https://www.biorxiv.org/content/early/2018/05/09/318345.short | Three enzymes and one substrate; regulation of flux through the glyoxylate shunt in the opportunistic pathogen, Pseudomonas aeruginosa. | 2018 | AL Crousilles, SK Dolan, P Brear, DY Chirgadze- bioRxiv, 2018 - biorxiv.org | IDH active site architecture with that of ICD in the AceK-ICD complex from E. coli ( PDB ; 3LCB) reveals that X-ray Diffraction, Structure Determination, and Refinement ICL, IDH and ICD were solved using the structural templates 3I4E (to be published), 4ZDA (to be published) and |
| 6 | 3i4e | - | http://www.jbc.org/content/early/2018/07/20/jbc.RA118.004514.short | Gluconeogenic precursor availability regulates flux through the glyoxylate shunt in Pseudomonas aeruginosa | 2018 | A Crousilles, SK Dolan, P Brear, DY Chirgadze- Journal of Biological, 2018 - ASBMB | domain of each chain (Figure S7), suggesting that catalysis is accompanied by structural rearrangements Comparison of the P. aeruginosa IDH active site architecture with that of ICD in the The structure ( PDB ; 5M2E), solved to 2.7 resolution, was very similar to that reported for |
| 7 | 3i4e | - | http://www.diva-portal.org/smash/record.jsf?pid=diva2:1134642 | Importance of the Clr2 protein in heterochromatin formation in the fission yeast Schizosaccharomyces pombe | 2017 | D Steinhauf - 2017 - diva-portal.org | ... The exact function of Clr2 is unknown but the 3D crystal structure of Clr2 reveals four distinct domains; an N-terminal domain ... The second internal domain resembles a bromo-adjacent homology (BAH) domain, and 3D- structures show the domain interacting with Clr1 through a ... Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. |
| 8 | 3i4e | 3p0x, 3oq8, 3eol, 3e5b | http://www.hindawi.com/journals/bmri/2015/895453/abs/ | Potential Inhibitors for Isocitrate Lyase of Mycobacterium tuberculosis and Non-M. tuberculosis: A Summary | 2015 | YV Lee, HA Wahab, YS Choong - BioMed Research International, 2015 - hindawi.com | ... 1F8M [5]], Escherichia coli [PDB id: 1IGW [6]], Burkholderia pseudomallei [PDB id: 3I4E (paperunpublished ... crystal structure using Ligand Fit module of Discovery Studio 2.1 software (PDB id1F8M ... View at Scopus; V. Sharma, S. Sharma, KHZ Bentrup et al., “Structure of isocitrate ... |
| 9 | 3i4e | 3p0x | http://link.springer.com/article/10.1007/s11274-013-1258-8 | Residues Asn214, Gln211, Glu219 and Gln221 contained in the subfamily 3 catalytic signature of the isocitrate lyase from Pseudomonas aeruginosa are involved in its catalytic and thermal properties | 2013 | J Campos-Garcia, C Diaz-Perez? - World Journal of Microbiology and Biotechnology, 2013 - Springer | ... The ICL-Pa model in the open state was built using homologous ICL from A. nidulans (PDB 1DQU), Burkholderia pseudomallei (PDB 3I4E), and E. coli (PDB 1IGW), whereas the closed state model was built using the closed model of a homologous ICL from Brucella melitensis ... |
| 10 | 3i4e | - | http://dx.plos.org/10.1371/journal.pone.0086948.g007 | Silencing Motifs in the Clr2 Protein from Fission Yeast, Schizosaccharomyces pombe | 2014 | D Steinhauf, A Rodriguez, D Vlachakis, G Virgo… - PloS one, 2014 - dx.plos.org | ... forcefield. The crystal structure of the Haloalkane Dehalogenase (PDB entry: 3QNM) was used for the modeling of C2SM1. Likewise ... the C2SM2. Finally, the Isocitrate Lyase (PDB entry: 3I4E) was used for the modeling of C2SM3. The sequence ... |