We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ixc | - | http://www.sciencedirect.com/science/article/pii/S002228361300003X | PIM: Phase Integrated Method for Normal Mode Analysis of Biomolecules in a Crystalline Environment | 2013 | M Lu, J Ma - Journal of molecular biology, 2013 - Elsevier | ... There are totally 29 out of the 65 space groups in this case, shown in the leftmost column of Table 1. In the Protein Data Bank (PDB), 73.3% of the structures belong to this case. ... In the PDB, 24.0% of the structures belong to the case. ... |
| 2 | 3uam | - | http://www.jbc.org/content/288/18/12828.short | Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the basidiomycota fungus Phanerochaete chrysosporium | 2013 | M Wu, GT Beckham, AM Larsson, T Ishida? - Journal of Biological Chemistry, 2013 - ASBMB | ... date, there are five LPMO structures from five different fungal GH61s available: H. jecorina GH61B (Protein Data Bank (PDB) code 2VTC ... PDB code 2XWX) (17), Enterococcus faecalis CBM33 (PDB code 4A02) (18), and Burkholderia pseudomallei CBM33 (PDB code 3UAM ... |
| 3 | 3fvb | - | http://dx.plos.org/10.1371/journal.pone.0068421 | Factors Controlling the Redox Potential of ZnCe6 in an Engineered Bacterioferritin Photochemical 'Reaction Centre' | 2013 | A Mahboob, S Vassiliev, PK Poddutoori, A van der Est? - PloS one, 2013 - dx.plos.org | ... In addition, this aminoacid is conserved among ferritins from several organisms (PDB ID: 2FKZ, 3E1M, 3IS8, 3FVB) suggesting that it serves to regulate heme potential. Replacing it with an aliphatic residue is expected to eliminate this negative effect. ... |
| 4 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S0009279712002773 | Potential monovalent cation-binding sites in aldehyde dehydrogenases | 2013 | L Gonz?lez-Segura, H Riveros-Rosas? - Chemico-biological Interactions, 2013 - Elsevier | ... Cation-binding sites. Family/organism, PDB code, Resolution (?), Monovalent cation in protein solution/crystallization solution, Intra, Inter, Central-cavity a. ... Brucella melitensis, 3EK1, 2.10, nr/(NH 4 ) 2 SO 4 1 M, Proposed (Water ? Na + ), Proposed (Water ? Na + ) i, No (Lys at 479 ... |
| 5 | 3ijp | 4f3y | http://scripts.iucr.org/cgi-bin/paper?pu5392 | Cloning, expression, crystallization and preliminary structural studies of dihydrodipicolinate reductase from Acinetobacter baumannii | 2013 | S Kaushik, A Singh, M Sinha, P Kaur? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... 143, 617-623.] ), Bartonella henselae (BhDHDPR; PDB entry 3ijp ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), Burkholderia thailandensis (BtDHDPR; PDB entry 4f3y ; Seattle Structural Genomics Center for Infectious Disease, unpublished ... |
| 6 | 3uam | - | http://core.kmi.open.ac.uk/download/pdf/11699007.pdf | X-ray structure and function studies of key enzymes for biomass conversion: GH6 cellobiohydrolases and GH61 lytic polysaccharide monooxygenases (LPMO) | 2013 | M Wu - 2013 - core.kmi.open.ac.uk | ... crassa Pch/P. chrysosporium Phanerochaete chrysosporium PDB Protein Data Bank PEG Polyethylene ... faecalis CBM33 (PDBcode 4A02)(Vaaje-Kolstad et al., 2012); PDB code 4ALC ... 4ALE, 4ALO, 4ALR, 4ALS, 4ALT) and Burkholderia pseudomallei CBM33 (PDBcode 3UAM). ... |
| 7 | 3obk | - | http://www.ingentaconnect.com/content/ben/ctmc/2013/00000013/00000001/art00006 | Impact of quaternary structure dynamics on allosteric drug discovery | 2013 | EK Jaffe - Current topics in medicinal chemistry, 2013 - ingentaconnect.com | ... Toxoplasma gondii PBGS (PDB id 3OBK, shown left) contains a 13 amino acid C-terminal exten- sion that forms a domain swapped beta sheet (orange/yellow), which locks the dimer into the pro-octamer conformation. Pseudomonas ... |
| 8 | 3r8c | 3te8 | http://onlinelibrary.wiley.com/doi/10.1002/prot.24214/full | Improving ranking of models for protein complexes with side chain modeling and atomic potentials | 2013 | S Viswanath, DVS Ravikant? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... Target PDB ID, Receptor homolog (PDB_chain): target receptor chain, Ligand homolog (PDB_chain): target ligand chain. 2xt4, 2XT2_A:B, 2XT2_A:A. 2xty, 2XTW_A:B, 2XTW_A:A. ... 3pra, 3PRB_A:B, 3PRB_A:A. 3r8c, 3R20_A:A, 3R20_A:B. 3rd6, 3Q64_A:A, 3Q64_A:B. ... |
| 9 | 3r2v | - | http://dx.plos.org/10.1371/journal.pone.0081027.g001 | Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome | 2013 | S Warren, XF Wan, G Conant, D Korkin - PloS one, 2013 - dx.plos.org | ...Table 3. Coverage and sequential similarity of protein templates. Template Template subtype Template similarity, % Residues covered 3R2V (A) H3N2 93 538-720 |
| 10 | 3lgj | 3pgz | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6558165 | Comparative modelling and in-silico drug designing | 2013 | D Kumar, A Sarvate, S Singh? - IEEE Conference on Information & Communication Technologies (ICT), 2013 - ieeexplore.ieee.org | ... Model No. Template PDB ID Percentage of residues in most favoured region of Ramachandran plot Z- score 1 1Z9F 91 -4.9 2 3TQY 93 -4.53 3 1SRU 90 -3.23 ... 8 3PGZ 88 -4.27 9 3ULL 92 -4.06 10 2DUD 95 -4.13 11 1SE8 94 -4.33 12 3LGJ 94 -5.34 13 5MDH 90 -1.48 ... |