We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3njd | 3svk | http://search.proquest.com/openview/ee126ccbca4d4d8958dd7f9217f8fdd2/1?pq-origsi... | Protein 3-D Structure Representation for Alignment-Free Comparison and Structural Motif Discovery of Proteins, and Hierarchical Protein Classification | 2015 | S Singh - 2015 - search.proquest.com | ... a lot more diversity and complexity, rather than having a simple, unique rigid structure, and that ...of a growing number of methods, there is no widely accepted 3-D structural alignment method.None of the current methods for searching PDB are guaranteed to find true matches in ... |
| 2 | 4zju | 4zr8, 5ha4 | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1451387 | Screening of Potential Lead Molecules Against Prioritized Targets of Multi-Drug Resistant Acinetobacter Baumannii- Insights From Molecular Docking, Molecular Dynamic | 2018 | S Skariyachan, M Manjunath- Biomolecular Structure, 2018 - Taylor & Francis | Fourteen potential drug targets were screened based on their functional role in various biosynthetic pathways and the 3D structures of 9 The study suggests that the aforementioned lead candidates and targets can be used for structure -based drug screening towards MDR A |
| 3 | 4gnv | - | http://www.jbc.org/content/early/2018/01/09/jbc.RA117.000948.short | Structural and mechanistic analysis of a -glycoside phosphorylase identified by screening a metagenomic library | 2018 | SS Macdonald, A Patel, VLC Larmour- Journal of Biological, 2018 - ASBMB | in BglP it is a glutamine, as seen in the structural overlay of Figure 8C wherein the 2FGlc- BglP structure is superimposed on the structures of two other GH3 -N-acetylglucosaminidases (NagZ from Burkholderia cenocepacia in complex with GlcNAc [ PDB : 4GNV ] and NagZ from |
| 4 | 3ief | 3knu | http://www.sciencedirect.com/science/article/pii/S0022283614005798 | Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins | 2015 | SS MacKinnon, SJ Wodak - Journal of molecular biology, 2015 - Elsevier | ... In addition, we identified protein structures in the PDB related to each member of our ... We examineddomain re-orientations in these relatives and how the quaternary structure is affected ... This allowedus to characterize the level of structural plasticity in protein families comprising ... |
| 5 | 3v9o | 3urr | https://www.biorxiv.org/content/early/2018/09/06/409730.abstract | Flexible backbone assembly and refinement of symmetrical homomeric complexes | 2018 | SSR Burman, RA Yovanno, JJ Gray- bioRxiv, 2018 - biorxiv.org | For local docking, specific symmetry definitions can be recapitulated from a PDB file of a complex About 22% of all structures are unfavorable, and all but one near-native (less than 5 number of inter-chain atom-atom clashes is 50.6, compared to 21 in the native structure |
| 6 | 4yet | 3js4 | http://www.doiserbia.nb.rs/Article.aspx?id=0352-51392100042S | Amide- interactions in active centers of superoxide dismutase | 2021 | S Stojanovi, ZZ Petrovi- Journal of the Serbian, 2021 - doiserbia.nb.rs | A, 3js4:A, 3lio:A, 3lsu:A, 3mds:A, 3pu7:A, 3tqj:A, 4br6:A, 4c7u:A, 4f2n:A, 4ffk:A, 4yet :A, 5a9g 7. Example of the structure preferred amide interactions of FeSOD from the Thermosynechococcus elongatus ( PDB code 1my6): (a) parallel-displaced and (b) T-shaped structure |
| 7 | 5t8s | - | https://bmcpharmacoltoxicol.biomedcentral.com/articles/10.1186/s40360-020-00402-... | Prospects of Indole derivatives as methyl transfer inhibitors: antimicrobial resistance managers | 2020 | S Tha, S Shakya, R Malla- BMC, 2020 - bmcpharmacoltoxicol.biomedcentral | An integration of structure -based virtual screening and ligand-based virtual screening was employed to explore the antimicrobial properties of indole The X-ray diffraction structures of S-adenosyl methionine synthase, MetK from N. gonorrhoeae ( PDB id: 5T8S ) [13]; cobA from |
| 8 | 3m4s | - | http://scripts.iucr.org/cgi-bin/paper?S0907444912050135 | Ultratight crystal packing of a 10 kDa protein | 2013 | S Trillo-Muyo, A Jasilionis, MJ Domagalski? - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... 2xge ). Cases for which the solvent content was artificially low owing to long missing N- and C-terminal fragments were not considered either (PDB entries 2xnq , 2duy , 2axo , 3bqh , 2f9l , 3m4s , 3nzl , 2xjx , 4eti , 2ds8 and 1vfq ). ... |
| 9 | 3nf4 | - | http://pubs.acs.org/doi/full/10.1021/bi4002979 | Mycobacterium tuberculosis Utilizes a Unique Heterotetrameric Structure for Dehydrogenation of the Cholesterol Side Chain | 2013 | ST Thomas, NS Sampson - Biochemistry, 2013 - ACS Publications | ... 16) FAD binding and CoA binding in published ACAD Protein Data Bank (PPDB) structures ... between FAD and several ACADs in reported crystal structures (PDB entry in ... 2WBI) and bacterial ACADS from Megsphaera elsdenii (1BUC) and Mycobacterium thermoresistibile (3NF4 ... |
| 10 | 3p0x | - | https://www.sciencedirect.com/science/article/pii/S0166685120300992 | Characterisation and structural analysis of glyoxylate cycle enzymes of Teladorsagia circumcincta | 2020 | S Umair, C Bouchet, N Palevich, HV Simpson- Molecular and Biochemical, 2020 - Elsevier | to compare the TciICL and TciMS protein sequences with deposited structures in the Protein Data Bank ( PDB ) Locations are shown of the C- and N-terminus in the predicted tertiary structure of TciICL C) and TciMS in salmon (F) within 4 of the superimposed 3P0X and 3S9Z |