We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8T7W | 2023 | 0 |
| 8T7Z | 2023 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vnx | 3qhx | https://www.sciencedirect.com/science/article/pii/S0022283620306033 | Crystallographic Snapshots of the Dunathan and Quinonoid Intermediates provide Insights into the Reaction Mechanism of Group II Decarboxylases | 2020 | SC Gayathri, N Manoj- Journal of Molecular Biology, 2020 - Elsevier | Previously, we reported the biochemical characterization and the crystal structure of an archaeal type-I transferase superfamily and displays the characteristic three-domain architecture of the PLP aldehyde bound form (apoMjDCPLP ALD , non-covalently bound, PDB ID: 3F9T |
| 2 | 5vnx | 5jay | https://www.nature.com/articles/s41598-018-32905-1 | Riemerella anatipestifer AS87_RS09170 gene is responsible for biotin synthesis, bacterial morphology and virulence | 2018 | X Ren, X Wang, H Shi, X Zhang, Z Chen, KK Malhi- Scientific reports, 2018 - nature.com | 1DJE [30.2% identity]), Burkholderia multivorans ( PDB accession no. 5VNX [28.6% identity]) and Mycobacterium smegmatis ( PDB accession no. 3WY7 [29.9% identity]) 6). WT Yb2 cells were integral with clear structures , and few were undergoing division |
| 3 | 5vog | - | https://scripts.iucr.org/cgi-bin/paper?ba5306 | ALIXE: a phase-combination tool for fragment-based molecular replacement | 2020 | C Milln, E Jimnez, A Schuster- Section D: Structural, 2020 - scripts.iucr.org | 2.4.1. Hypothetical protein ( PDB entry 5vog ). The crystal structure of a hypothetical protein from Neisseria gonorrhoeae with bound ppGpp was downloaded from the PDB ( PDB entry 5vog ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) |
| 4 | 5vog | 4mh4 | https://www.tdx.cat/handle/10803/663022 | Phase Combination and its Application to the Solution of Macromolecular Structures: Developing ALIXE and SHREDDER | 2018 | CL Milln Nebot - 2018 - tdx.cat | Table 1 Test set for performance evaluation of SHREDDER and ALIXE... ID PDB 5VOG solvent content |
| 5 | 5VOG | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7674647/ | Structural analysis of (p) ppGpp reveals its versatile binding pattern for diverse types of target proteins | 2020 | GS Kushwaha, A Patra, NS Bhavesh- Frontiers in microbiology, 2020 - ncbi.nlm.nih.gov | Although, glycosidic bond and ribose sugar in the nucleotide structure exhibit conformational flexibility and classical molecular dynamics simulation on nucleotides is S.No, Macromolecule Name, Resolution (), PDB ID 14, Putative phosphoribosyltransferase, 1.50, 5VOG |
| 6 | 5vp5 | 3enn | https://www.nature.com/articles/s41598-021-86400-1 | Insights into Acinetobacter baumannii fatty acid synthesis 3-oxoacyl-ACP reductases | 2021 | EM Cross, FG Adams, JK Waters, D Arago- Scientific reports, 2021 - nature.com | Treatments for 'superbug' infections are the focus for innovative research, as drug resistance threatens human health and medical practices globally. In particular, Acinetobacter baumannii (Ab) infections are repeatedly reported as difficult to treat due to increasing antibiotic resistance |
| 7 | 5vp5 | - | https://aca.scitation.org/doi/full/10.1063/4.0000089 | Developing a macromolecular crystallography driven CURE | 2021 | KJ McLaughlin - 2021 - aca.scitation.org | While these protein x-ray crystallography structures are key to allowing students to CURE that could expose and excite a next generation of potential structural scientists 3 3. KJ McLaughlin, Understanding structure : A computer-based macromolecular biochemistry lab activity, J |
| 8 | 5vpq | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15854 | Conserved residues Glu37 and Trp229 play an essential role in protein folding of lactamase | 2021 | A Chikunova, MP Manley, M Ud Din Ahmad- The FEBS, 2021 - Wiley Online Library | (2013). Cation- Interactions in -Lactamases: The Role in Structural Stability, Cell Biochem. Biophys. 66, 147155 [49] RP Joosten, F. Long, GN Murshudov & A. Perrakis. (2014). The PDB -REDO server for macromolecular structure model optimization, IUCrJ. 1, 213220 ... Pro226-Trp229-Pro251-Pro252-(Phe287) chain: β-lactamase from Burkholderia phymatum—gold (5VPQ), ... |
| 9 | 5vrb | 4xeu, 3upt, 3uk1 | https://tel.archives-ouvertes.fr/tel-01818066/ | Ingnierie de la transctolase de Geobacillus stearothermophilus: nouvelles stratgies pour la synthse enzymatique de cetoses rares | 2017 | M Lorilliere - 2017 - tel.archives-ouvertes.fr | Neisseria gonorrhoeae (2017) (5VRB.pdb) ou Chlamydomonas reinhardtii (2017) [76], toutes les TKs sont dimériques et constituées de deux sous-unités |
| 10 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |