We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6uww | 6aqg | http://www.journals.chemsociety.org.ng/index.php/jcsn/article/view/1103 | VIRTUAL SCREENING AND MACHINE LEARNING-BASED IDENTIFICATION OF TROPICAL PLANT METABOLITES WITH MULTIPLE Mycobacterium ulcerans | 2025 | CE Duru, CN Nwofor- Journal of Chemical, 2025 - journals.chemsociety.org.ng | structure (obtained from the Protein Data Bank, PDB ) superimposed onto the X-ray-resolved crystal structure of the For 6UWW and 6AQG, structural optimization efforts should |
| 2 | 4qfh | - | https://www.arca.fiocruz.br/handle/icict/23073 | Integrao de diferentes abordagens para a avaliao de atividade antiparasitria, propriedades ADMET e alvos celulares de novas Arilimidamidas sobre | 2016 | CC Santos - 2016 - arca.fiocruz.br | OMS Organizao Mundial de Sade PAINS Do ingls Pan-assay Interference compounds PCR Reao em cadeia da polimerase PDB Do ingls Protein Data Bank pKa Constante de ionizao de cidos Pt Pentamidina SdpS Do ingls Spermidine synthase |
| 3 | 4g7f | - | http://www.academiajournals.com/s/8-Tesis-Sotelo-Baltazar-Carlos-Alexis.pdf | HUMANIDADES, CIENCIA, TECNOLOGA E INNOVACIN EN PUEBLA | 2019 | CAS BALTAZAR, UNMM INMUNIZADO, C ORAL - academiajournals.com | Page 1. HUMANIDADES, CIENCIA, TECNOLOGA E INNOVACIN EN PUEBLA ISSN 2644-0903 online VOL. 2, NO. 1, 2020 WWW.ACADEMIAJOURNALS.COM TRABAJO DE INVESTIGACIN AUSPICIADO POR EL CONVENIO CONCYTEP-ACADEMIA JOURNALS |
| 4 | 4f40 | 4h51, 4h7p, 4f2n | https://www.preprints.org/manuscript/201902.0122 | Leishmania Proteomics: An in Silico Perspective | 2019 | CA Padilla, MJ Alvarez, A Combariza - 2019 - preprints.org | PDB -codes but same structure and proteins with equal structures but elucidated from dif thase from L. major (PGF; PDB ID: 4F40 ) is involved in the lipid metabolic pathway, acting FPPS protein ( PDB ID: 4JZX) is potently inhibited by bisphosphonates in the trypanosomatid |
| 5 | 3p10 | 3mbm, 3q8h, 3qhd, 3p0z | http://commons.lib.niu.edu/handle/10843/21095 | L-Tryptophan hydroxamic acid derivatives as Burkholderia pseudomallei IspF inhibitors | 2017 | CA Muller - 2017 - commons.lib.niu.edu | bank ( PDB ) file of the Burkholderia pseudomallei IspF crystal structure (3P0Z) was uploaded to AutoDock Tools. The water molecules were removed from the enzyme, as well as any co- crystallized structures (FOL955 and cytidine) and free ions (K+ and Cl-). This cleaned up |
| 6 | 2lol | 2lky, 2kwl | http://www.crcnetbase.com/doi/pdfplus/10.1201/9781315368863-14 | Dynamic Analysis of Backbone-Hydrogen-Bond Propensity for Protein Binding and Drug Design | 2016 | CA Menndez, SR Accordino - Biopolymers for , 2016 - crcnetbase.com | ... binding (Bogan and Thorn 1998; Li and Liu 2009) propose that the structure of the ... layers of aset of complete (without missing residues) proteins without ligands (PDB IDs: 1AHO ... 2L4V, 2L5R,2L7W, 2LA1, 2LAO, 2LCU, 2LFN, 2LHC, 2LHS, 2LJM, 2LKB, 2LKY, 2LOL, 2LPK, 2PNE ... |
| 7 | 4hwg | - | https://www.biorxiv.org/content/10.1101/535138v1.abstract | Energy Landscape of the Domain Movement in Staphylococcus aureus UDP-N-acetylglucosamine 2-epimerase | 2019 | C de Azevedo, AS Nascimento- bioRxiv, 2019 - biorxiv.org | chain without ligands PDB ID Organism Ligands Oligomeric state CV Angle Chain A (deg) Rickettsia bellii ( 4HWG ). We hypothesize that the cubic symmetry observed in this crystal (UDP-GlcNac) and cofactor (UDP) are found bound in the crystal structure (1VGV, 3BEO, 4FKZ |
| 8 | 4iuj | - | https://www.nature.com/articles/s41589-024-01813-z | PROTAR Vaccine 2.0 generates influenza vaccines by degrading multiple viral proteins | 2025 | C Zhang, J Hou, Z Li, Q Shen, H Bai, L Chen- Nature Chemical, 2025 - nature.com | Data Bank ( PDB ) under accession numbers 4WSB, 4WSB, 4IUJ , 2IQH, 7JM3 and 4OPH, respectively. The 3D structure of influenza B viral PA protein was deposited to the PDB under |
| 9 | 6nb3 | - | https://advances.sciencemag.org/content/7/1/eabe5575.abstract | Conformational dynamics of SARS-CoV-2 trimeric spike glycoprotein in complex with receptor ACE2 revealed by cryo-EM | 2021 | C Xu, Y Wang, C Liu, C Zhang, W Han- Science, 2021 - advances.sciencemag.org | For the FP region, we first built the homology model by the Modeller tool within Chimera by using the MERS-CoV S structure (PDB: 6NB3) as template (2, 58, 59) and then used Rosetta to refine this region against the density map |
| 10 | 7k43 | 7k4n | https://www.nature.com/articles/s41401-021-00851-w | Structure genomics of SARS-CoV-2 and its Omicron variant: drug design templates for COVID-19 | 2022 | C Wu, W Yin, Y Jiang, HE Xu- Acta Pharmacologica Sinica, 2022 - nature.com | on uncovering structures and functions for structural biology of SARS-CoV-2 and discuss important biological issues that remain to be addressed. We present the examples of structure - ... S2E12 (represented as a cyan surface) binds to the “up” conformation of SARS-CoV-2 S RBD (PDB: 7K4N); S2M11 (represented as a brown surface) binds to the “down” conformation of SARS-CoV-2 S RBD (PDB: 7K43); |