SSGCID
Seattle Structural Genomics Center for Infectious Disease

Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Manually reviewed citations

# PDB Additional SSGCID structures cited Link Title Year Citation Highlighted abstract
1 3iml - http://31.24.0.66/bj/452/bj4520027add.pdf Insight into S-adenosylmethionine biosynthesis from the crystal structures of the human methionine adenosyltransferase catalytic and regulatory subunits 2013 N SHAFQAT, JRC MUNIZ, ES PILKA? - Biochem. J, 2013 - 31.24.0.66 ... sequences include hMAT1A (PDB code 2OBV; Uniprot ID Q00266), hMAT2A (PDB code 2P02; Uniprot ID P31153), rMAT1A (PDB code 1O9T; Uniprot ID P13444), eMAT (PDB code 1RG; Uniprot ID P0A817) and Burkholderia pseudomallei MAT (PDB code 3IML; Uniprot ID ...
2 3qh4 - http://www.intechopen.com/books/tuberculosis-current-issues-in-diagnosis-and-man... Lipid Inclusions in Mycobacterial Infections 2013 M Stehr, AA Elamin, M Singh - 2013 - intechopen.com ... Furthermore the three-dimensional structures of the esterases Rv0045c (PDB 3P2M) [78], Rv1847 (PDB 3S4K), and LipW (3QH4) from M. tuberculosis have been determined, but unfortunately it is not known whether these enzymes are involved in TAG hydrolysis. 3.5. ...
3 3lb5 3r6f, 3p0t, 3oxk, 3o0m http://onlinelibrary.wiley.com/doi/10.1111/febs.12330/full Structural characterization of human histidine triad nucleotide-binding protein 2, a member of the histidine triad superfamily 2013 KM Maize, CR Wagner, BC Finzel - FEBS Journal, 2013 - Wiley Online Library ... conformational change from an 'open' to a 'closed' form during catalysis [eg Protein Data Bank (PDB) code: 3BL9 ... proteins that have not been described or compared in the literature (ie PDB structures: 1XQU, 1Y23, 2EO4, 2OIK, 3ANO, 3IMI, 3I4S, 3124, 3LB5, 3L7X, 3KSV ...
4 3kre 3r9r http://www.sciencedirect.com/science/article/pii/S0141813012004254 Structure of SAICAR synthetase from< i> Pyrococcus horikoshii</i> OT3: Insights into thermal stability 2013 K Manjunath, SP Kanaujia, S Kanagaraj? - International journal of ?, 2012 - Elsevier ... of the native and its complex from S. cerevisiae (PDB-ids: 1obg, 1obd, 2cnu, 2cnv, 2cnq), T. maritima (PDB-id: 1kut; [36]), E. coli (PDB-ids: 2gqs, 2gqr; [37]), G. kaustophilus (PDB-id: 2ywv), M. jannaschii (PDB-ids: 2z02, 2yzl), E. chaffeensis (PDB-id: 3kre), C. perfringens (PDB-id ...
5 3enk - http://scripts.iucr.org/cgi-bin/paper?cb5020 Structure and in silico substrate-binding mode of ADP-L-glycero-D-manno-heptose 6-epimerase from Burkholderia thailandensis 2013 MS Kim, A Lim, SW Yang, J Park, D Lee? - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org ... complexed with six different types of substrate have been deposited in the Protein Data Bank (Table 2 ... Cov ++ (%), Cavity volume (? 3 ), Molecular volume (? 3 ), Cavity/molecule, RelatedPDB entries. ... B. pseudomallei (3enk ), UDP- -D-glucose, 7.13, 2.72, 22, 37, 93, 830.8, 181.5, ...
6 3qdf 3r6o, 3rr6 http://www.biochemj.org/bj/449/bj4490051.htm Crystal structures of Cg1458 reveal a catalytic lid domain and a common catalytic mechanism for the FAH family 2013 R Tingting, G Yanyan, M May, Z Wenjun? - Biochemical Journal, 2013 - biochemj.org ... Source/description, PDB ID, Resolution (?), Sequence identity (%), Aligned residues, Backbone RMSD (?). C. glutamicum/Cg1458, 4DBF, 1.90, ?, ?, ?. 4DBH, 2.00, ?, ?, ?. Mycobacterium marinum M/MMAR-1718, 3QDF, 2.05, 56.73, 245, 1.11. ...
7 3khp - http://scripts.iucr.org/cgi-bin/paper?rl5046 Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv 2013 R Biswas, D Dutta, AK Das - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org ... PDB entry, Identity (%), Query cover (%), Reference. 1pn2, 47, 10, Koski et al. (2004 [Koski, MK, Haapalainen, AM, Hiltunen, JK & Glumoff, T. (2004). ... F66, 272-274.] ). 3khp, 36, 19, Seattle Structural Genomics Center for Infectious Disease (unpublished work). 3oml, 33, 37, Haataja ...
8 4f3p - http://www.sciencedirect.com/science/article/pii/S0969212613002700 Functional Diversity of Tandem Substrate-Binding Domains in ABC Transporters from Pathogenic Bacteria 2013 F Fulyani, GK Schuurman-Wolters, AV Zagar, A Guskov… - Structure, 2013 - Elsevier Supplemental Information ... unliganded liganded 1 42 glnH Escherichia coli Gln v v 1.94 1GGG, 1WDN 0.5 µM (Hsiao, et al., 1996) 2 38 glnH Burkholderia pseudomallei Gln v 2.4 4F3P nd Abendroth J, 2012 ...
9 3ue9 - http://scripts.iucr.org/cgi-bin/paper?S1744309113021921 Purification, crystallization and preliminary X-ray analysis of adenylosuccinate synthetase from the fungal pathogen Cryptococcus neoformans 2013 RD Blundell, SJ Williams, CA Morrow? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org ... Zhou, S. Peterson, W. Anderson & A. Joachimiak, unpublished work), Campylobacter jejuni (43% identity; PDB entry 3r7t ; Center for Structural Genomics of Infectious Diseases, unpublished work) and Burkholderia thailandensis (40% identity; PDB entry 3ue9 ; Seattle Structural ...
10 3k14 - http://pubs.acs.org/doi/abs/10.1021/ci400020a An Extensive and Diverse Set of Molecular Overlays for the Validation of Pharmacophore Programs 2013 I Giangreco, DA Cosgrove? - Journal of chemical information and modeling, 2013 - ACS Publications ... All such algorithms must be validated with respect to known ligand overlays, usually by extracting ligand overlay sets from the Protein Data Bank (PDB). ... This is almost always done by reference to structures drawn from the Protein Data Bank (PDB). ...