We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4o2d | - | http://dx.plos.org/10.1371/journal.pone.0113568.g009 | Biochemical and Structural Characterization of Mycobacterial Aspartyl-tRNA Synthetase AspS, a Promising TB Drug Target | 2014 | SS Gurcha, V Usha, JAG Cox, K Fütterer, KA Abrahams… - PloS one, 2014 - dx.plos.org | ... The corresponding loop in E. coli AspRS is 11 amino acid residues shorter (Figure 7). Anapo-structure of Ms-AspS has recently been deposited in the PDB (entry 4O2D), in which thisloop assumes a very different conformation, forming a 2-turn α-helix and folding back ... |
| 2 | 3ief | 3knu | http://www.sciencedirect.com/science/article/pii/S0022283614005798 | Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins | 2015 | SS MacKinnon, SJ Wodak - Journal of molecular biology, 2015 - Elsevier | ... In addition, we identified protein structures in the PDB related to each member of our ... We examineddomain re-orientations in these relatives and how the quaternary structure is affected ... This allowedus to characterize the level of structural plasticity in protein families comprising ... |
| 3 | 4gnv | - | http://www.jbc.org/content/early/2018/01/09/jbc.RA117.000948.short | Structural and mechanistic analysis of a -glycoside phosphorylase identified by screening a metagenomic library | 2018 | SS Macdonald, A Patel, VLC Larmour- Journal of Biological, 2018 - ASBMB | in BglP it is a glutamine, as seen in the structural overlay of Figure 8C wherein the 2FGlc- BglP structure is superimposed on the structures of two other GH3 -N-acetylglucosaminidases (NagZ from Burkholderia cenocepacia in complex with GlcNAc [ PDB : 4GNV ] and NagZ from |
| 4 | 3v9o | 3urr | https://www.biorxiv.org/content/early/2018/09/06/409730.abstract | Flexible backbone assembly and refinement of symmetrical homomeric complexes | 2018 | SSR Burman, RA Yovanno, JJ Gray- bioRxiv, 2018 - biorxiv.org | For local docking, specific symmetry definitions can be recapitulated from a PDB file of a complex About 22% of all structures are unfavorable, and all but one near-native (less than 5 number of inter-chain atom-atom clashes is 50.6, compared to 21 in the native structure |
| 5 | 3nf4 | - | http://pubs.acs.org/doi/full/10.1021/bi4002979 | Mycobacterium tuberculosis Utilizes a Unique Heterotetrameric Structure for Dehydrogenation of the Cholesterol Side Chain | 2013 | ST Thomas, NS Sampson - Biochemistry, 2013 - ACS Publications | ... 16) FAD binding and CoA binding in published ACAD Protein Data Bank (PPDB) structures ... between FAD and several ACADs in reported crystal structures (PDB entry in ... 2WBI) and bacterial ACADS from Megsphaera elsdenii (1BUC) and Mycobacterium thermoresistibile (3NF4 ... |
| 6 | 3sdo | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.13363/full | Structural and biochemical characterization of EDTA monooxygenase and its physical interaction with a partner flavin reductase | 2016 | SY Jun, KM Lewis, B Youn, L Xun - Molecular , 2016 - Wiley Online Library | ... E. Open (green) and closed (cyan) form lid domains are aligned to show conservation of secondary structure of both ... Structural homologues of EmoA. ... to EmoA showed that the highest match was NTA monooxygenase (NmoA) from Burkholderia pseudomallei ( PDB : 3SDO ) with ... |
| 7 | 4nbr | - | https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bio... | SCOT: Rethinking the Classification of Secondary Structure Elements | 2019 | T Brinkjost, C Ehrt, O Koch, P Mutzel- Bioinformatics, 2019 - academic.oup.com | -bulge which leads to a kinked (highlighted in green) -helical structure in 4nbr @ pdb (chain A for SCOT and SHAFT for the structure pair 4k20@ pdb and 5cna@ pdb results from based assignment methods except for SHAFT are the most robust ones regarding structure quality |
| 8 | 6tz8 | - | https://theses.hal.science/tel-04464042/document | Caractrisation de lectines de champignons opportunistes mergents et identification de nouvelles lectines partir d'extraits fongiques | 2024 | T CREPIN, U KRENGEL, A de Palma, GJ BOONS - theses.hal.science | Cyanovirin-N (CV-N) is a small protein from the cyanobacterium Nostoc ellipsosporum that binds mannosides and possesses strong virucidal properties against a wide range of viruses (... C. neoformans (PDB ID: 6TZ8) and Coccidioides immitis (PDB ID: 5B8I) [148]. In all the fungal complexes, the overall fold of calcineurin was very similar |
| 9 | 4ijn | - | http://tigerprints.clemson.edu/all_dissertations/1976/ | Acetate Metabolism: The physiological role of ADP-forming acetyl-CoA synthetase and acetate kinase in Entamoeba histolytica | 2017 | T Dang - 2017 - tigerprints.clemson.edu | ... these predictions. Inhibition and structural activity relationship studies revealed an ... 1.6 Acetate producing pathways within E. histolytica.....26 1.7 The structure of Methanosarcina thermophila acetate kinase.....30 ... |
| 10 | 4dq8 | 4ijn, 3p4i, 3r9p | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5517563/ | Investigation of pyrophosphate versus ATP substrate selection in the Entamoeba histolytica acetate kinase | 2017 | T Dang, C Ingram-Smith- Scientific Reports, 2017 - ncbi.nlm.nih.gov | ... ID 3P4I; Mycobacterium paratuberculosis, PDB ID 3R9P; Mycobacterium marinum PDB ID 4DQ8 . ... ACK structures were downloaded from Protein Data Bank ( PDB ): 4H0O (Entamoeba ... Structure superposition and modeling were performed using Accelrys Discovery Studio 3.5 ... |