We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3q8h | - | http://pubs.acs.org/doi/abs/10.1021/jm5010978 | Development of Inhibitors of the 2 C-Methyl-d-erythritol 4-Phosphate (MEP) Pathway Enzymes as Potential Anti-Infective Agents | 2014 | T Masini, AKH Hirsch - Journal of medicinal chemistry, 2014 - ACS Publications | ... ofhe cocrystal structure of 81 with B. pseudomallei IspF (PDB code 3Q8H, Figure 4) shows that there is no direct interaction of 81 with the catalytic Zn2+ cation, but the presence of the bicyclic aromatic ring, engaged in hydrophobic interactions, probably compensates for this lack, resulting in a strong affinity of 81 or B. pseudomallei IspF. ... |
| 2 | 4qfh | 4g7f, 4gie | https://www.mdpi.com/2218-273X/9/9/484 | Insights into Ergosterol Peroxide's Trypanocidal Activity | 2019 | T Meza-Menchaca, A Ramos-Ligonio- Biomolecules, 2019 - mdpi.com | \To identify potential Tc proteins that might directly interact with ergosterol peroxide, an inverse-docking screening was performed on a subset of Tc protein crystallography structures.. Table 1. The best matches between T. cruzi proteins and ergosterol peroxide in descending order of ∆G predictive value ... Dihydroorotate dehydrogenase 4QFH 3W1R −9.1 −11.17 6.407 |
| 3 | 4n0w | - | http://peds.oxfordjournals.org/content/early/2015/05/17/protein.gzv026.short | Conserved water molecules in bacterial serine hydroxymethyltransferases | 2015 | T Milano, ML Di Salvo, S Angelaccio… - … Design and Selection, 2015 - Oxford Univ Press | ... After PDB scrutiny, 11 structures were selected on the basis of better resolution, the absenceof point ... (2003) and Mustata and Briggs (2004) who analyzed the structural role of ... MD simulationswere carried out on the dimer in the apo form of the structure 4N0W corresponding to ... |
| 4 | 3sdo | - | https://link.springer.com/article/10.1007/s12539-017-0266-z | A Comprehensive Computational Analysis of Mycobacterium Genomes Pinpoints the Genes Co-occurring with YczE, a Membrane Protein Coding Gene | 2017 | T Milano, S Angelaccio, A Tramonti, ML di Salvo- Interdisciplinary, 2017 - Springer | Clustal Omega multiple sequence alignment between the “luciferase-like” cluster sequences and a set of PDB structures detected by Phyre2 and/or HHpred. Sequence ids refer to Table 3 while PDB codes indicate: 3SDO|A, the chain A of nitrilotriacetate monooxygenase from Burkholderia pseudomallei |
| 5 | 3hhj | - | http://www.jbc.org/content/285/1/444.short | Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base | 2010 | T Nakamura, S Meshitsuka, S Kitagawa, N Abe? - Journal of Biological Chemistry, 2010 - ASBMB | ... ?, Z = 19.0) and with dGTP (BdRppH-dGTP, 3EF5, rmsd = 1.9 ?, Z = 18.3) (40) and unknown proteins from Bartonella henselae (3HHJ, rmsd = 1.8 ... ray and NMR structures in the ligand-free form and 3.5 ?for 127 C? atoms between structures in the complex form (PDB IDs: 1MUT ... |
| 6 | 3u0g | 4m0j, 4tvi | https://www.nature.com/articles/srep38183 | Discovery and structural characterisation of new fold type IV-transaminases exemplify the diversity of this enzyme fold | 2016 | T Pavkov-Keller, GA Strohmeier, M Diepold- Scientific reports, 2016 - nature.com | from Mycobacterium smegmatis 48 , 3UYY from Deionococcus radiodurans 49 , 3U0G from Burkholderia Crystallographic data processing and structure refinement statistics are presented in Table 4 confirmed function are D-amino acid aminotransferases (eg PDB -code: 1DAA |
| 7 | 3nfw | - | http://www.jbc.org/content/287/31/26213.short | The C-terminal Domain of 4-Hydroxyphenylacetate 3-Hydroxylase from Acinetobacter baumannii Is an Autoinhibitory Domain | 2012 | T Phongsak, J Sucharitakul, K Thotsaporn? - Journal of Biological Chemistry, 2012 - ASBMB | ... Recently, the structure of the reductase of nitrilotriacetate monooxygenase (NTA_MoB; Protein Data Bank code 3NFW) from Mycobacterium thermoresistibile has been reported (43). However, NTA_MoB (189 residues) is smaller than cB from Chelatobacter sp. (335 residues). ... |
| 8 | 3qdf | - | http://scripts.iucr.org/cgi-bin/paper?hc5132 | Expression, purification, crystallization and preliminary crystallographic analysis of Cg1458: a novel oxaloacetate decarboxylase from Corynebacterium glutamicum | 2011 | T Ran, Y Wang, D Xu, W Wang - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2011 - scripts.iucr.org | ... was collected at 1.9 ? resolution using synchrotron radiation on beamline BL17U of SSRF, Shanghai, China. Structure-solution attempts by molecular replacement were successful with PDB entries 3qdf or 2dfu as the template. ... |
| 9 | 3o2e | - | https://portlandpress.com/bioscirep/article-abstract/doi/10.1042/BSR20202956/226... | Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines | 2020 | T Roret, G Alloing, JM Girardet, T Perrot- Bioscience, 2020 - portlandpress.com | protein structures found in the protein databank, we tentatively attributed the changes to the Interestingly, a structure of a BolA_H from the pathogen Coxiella burnetii ligating a Co atom was solved in the frame of a structural genomic initiative for drug design, deposited in ...The coordinates of A. thaliana, B. bovis, and C. burnetii BolA proteins are from previous crystal structures (PDB entries 4PUG, 4PUH, 4PUI, 3O2E and 3TR3) |
| 10 | 4ixo | - | http://scripts.iucr.org/cgi-bin/paper?kw5097 | X-ray structures of Nfs2, the plastidial cysteine desulfurase from Arabidopsis thaliana | 2014 | T Roret, H Pgeot, J Couturier, G Mulliert - Section F: Structural , 2014 - scripts.iucr.org | ... Group, PDB code, Organism, Sequence identity to AtNfs2 (%), UniProtKB accession No. Rmsd on C atoms, No. of equivalent residues to AtNfs2. ... 4eb7, 4hvk, 4ixo, Rickettsia africae, 20.7, C3PNQ7, 1.687, 218. 3a9x, Rattus norvegicus, 20.1, Q68FT9, 2.159, 263. 3a9y, 3aqz, ... |