We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3o0m | 3r6f, 3oj7, 3lb5 | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6354057/ | Crystal Structure of Histidine Triad Nucleotide-Binding Protein from the Pathogenic Fungus Candida albicans | 2019 | A Jung, JS Yun, S Kim, SR Kim, M Shin- Molecules and, 2019 - ncbi.nlm.nih.gov | 3. The most similar structure was HINT from the protozoal species Leishmania major (LmHINT); the Z-score was 18.8, and the rmsd Species b, C-terminal region, Z-score, RMSD (), Identity (%), C, PDB code, NCBI ID M. smegmatis, II, 14.9, 3.6, 29, 110, 3O0M , WP_011730267.1 |
| 2 | 4fi5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6913923/ | Identification and validation of specific B-cell epitopes of hantaviruses associated to hemorrhagic fever and renal syndrome | 2019 | F de Paiva Conte, BC Tinoco, TS Chaves- PLoS Neglected, 2019 - ncbi.nlm.nih.gov | 1) was performed against the expasy SWISS-MODEL template server [26][2][2]. Three structures were selected ( PDB ID: 5E04, 5FSG, 4FI5 ) with the The lowest energy model was selected using PyMOL Version 1.8 and your 3D structure evaluated with Verify 3D [29, 30 |
| 3 | 4yl5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093009/ | Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance | 2020 | ALC Barra, CD Lvia de Oliveira, LG Moro- Frontiers in Public, 2020 - ncbi.nlm.nih.gov | ID 2I5B (23)], Thermus thermophilus ( PDB ID 1UB0), A. baumannii ( PDB ID 4YL5 ), Bacteroides thetaiotaomicron tuberculosis (3O63), and for the bifunctional enzyme from Candida glabrata [ PDB IDs 3NL2 No crystal structure of an ESKAPE pathogen, ThiE, is available to date |
| 4 | 4xgi | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7326016/ | Structural studies of glutamate dehydrogenase (isoform 1) from Arabidopsis thaliana, an important enzyme at the branch-point between carbon and nitrogen | 2020 | M Grzechowiak, J Sliwiak, M Jaskolski- Frontiers in Plant, 2020 - ncbi.nlm.nih.gov | vertebrate, and fungal GDHs have been deposited in the Protein Data Bank ( PDB ) In the present study, we report the crystal structure of AtGDH1 in apo form, as To provide background for functional and structural discussions, we investigated the evolutionary divergence of the |
| 5 | 6vxx | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7505244/ | Comparative molecular docking analysis of the SARS CoV-2 Spike glycoprotein with the human ACE-2 receptors and thrombin | 2020 | P Bhanu, NH Kumar, SH Kumar, M Relekar- , 2020 - ncbi.nlm.nih.gov | PDB ID, Ligand, Binding Pose, Binding Energy (Kcal/mol), RMSD, Receptor, Bond Length ( Figure 1a: Structural representation of 6VXX and thrombin, Figure 1b: Molecular interaction of with the 7th pose, Key - the sticks represents thrombin, the secondary structure represents the |
| 6 | 6wps | 6wpt | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7586990/ | Immunological strategies against spike protein: Neutralizing antibodies and vaccine development for COVID19 | 2020 | J Huang, H Huang, D Wang, C Wang- Clinical and, 2020 - ncbi.nlm.nih.gov | Structural data of RBD of SARSCoV2 S protein with CR3022 Fab was retrieved from Protein Databank. (C) Structure of SARSCoV2 S protein with neutralizing antibody S309 Fab fragment ( PDB : 6WPS ) is shown in close state |
| 7 | 6tz8 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669531/ | Current Challenges and Opportunities in Designing ProteinProtein Interaction Targeted Drugs | 2020 | WH Shin, K Kumazawa, K Imai- and Applications in, 2020 - ncbi.nlm.nih.gov | Phase Reached*, Modality*, Drug PDB ID**, Drug-Protein PDB ID*, Target PPI PDB ID binding protein 1A inhibitor, Inhibitor, Approved (1994), Small molecule, FK5, 1BKF, 6TZ8 (FKBP12/CNA 2.8 resolution by cryo-electron microscopy (cryo-EM).65 The cryo-EM structure revealed ... 6TZ8 (FKBP12/CNA/CNB) (C. neoformans) |
| 8 | 5VOG | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7674647/ | Structural analysis of (p) ppGpp reveals its versatile binding pattern for diverse types of target proteins | 2020 | GS Kushwaha, A Patra, NS Bhavesh- Frontiers in microbiology, 2020 - ncbi.nlm.nih.gov | Although, glycosidic bond and ribose sugar in the nucleotide structure exhibit conformational flexibility and classical molecular dynamics simulation on nucleotides is S.No, Macromolecule Name, Resolution (), PDB ID 14, Putative phosphoribosyltransferase, 1.50, 5VOG |
| 9 | 3laa | 4lgo, 3s6l | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688925/ | Non-adaptive evolution of trimeric autotransporters in Brucellaceae | 2020 | MR Rahbar, M Zarei, A Jahangiri, S Khalili- Frontiers in, 2020 - ncbi.nlm.nih.gov | domain from Haemophilus influenzae genome ( PDB ID:1S7M; Yeo et al., 2004); structure of the parallel beta-roll collagen-binding domain of Yersinia enterocolitica adhesin YadA ( PDB ID: 1P9H Batch analyzes of the dataset suggested the existence of a few structural domains |
| 10 | 4g6c | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7744477/ | New Putative Antimicrobial Candidates: In silico Design of Fish-Derived Antibacterial Peptide-Motifs | 2020 | H Okella, JJ Georrge, S Ochwo, C Ndekezi- Frontiers in, 2020 - ncbi.nlm.nih.gov | a global docking procedure in four folds, motif-based prediction based on peptide conformation, rigid-body docking, scoring based on structural clustering; and final structure minimization. ... The affinity of peptide-motifs A15_B and A15_E was highest within chains of the target proteins (PDB ID 1rrv, 4g6c, and 4oj8). |