We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6mc0 | - | https://www.mdpi.com/864810 | High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtiiAn Enzyme Involved in the Photosynthetic | 2020 | T Le Moigne, P Crozet, SD Lemaire, J Henri- International journal of, 2020 - mdpi.com | 4A). Structural superposition of CrRPI1 with RpiA from Legionella pneumophila (LpRPI, PDB : 6MC0 , RMSD = 0.734 We describe the first structure of a ribose-5-phosphate isomerase from a Viridiplanta The structural fold of CrRPI1 (Figure 1B) is similar to previously described |
| 2 | 6bfu | - | https://link.springer.com/article/10.1186/s12859-019-3097-6 | Glycosylator: a Python framework for the rapid modeling of glycans | 2019 | T Lemmin, C Soto- BMC bioinformatics, 2019 - Springer | 1 ha0. 5fyl (gp120). 6bfu . Number of sequons. 6 A second N-Acetyl-D-Glucosamine will then be linked through a 1-4 glycosidic bond. Finally, an Alpha-D-Mannosewill be built ab initio and saved to a PDB file The structure of a mannose 9 will be imported as a Molecule instance |
| 3 | 6tys | 7ki6, 7ki4 | https://www.sciencedirect.com/science/article/pii/S016635422500141X | A monoclonal antibody targeting conserved regions of pre-fusion protein cross-neutralizes Nipah and Hendra virus variants | 2025 | T Li, H Xu, M Zhang, J Nie, B Liao, J Xie, Y Jiang, Y Liu- Antiviral Research, 2025 - Elsevier | The mAbs developed in this study and their conserved cross-neutralizing epitopes elucidated by structural analysis may contribute to the control of highly pathogenic HNV outbreaks. ... Local resolution estimation and filtering were performed using CryoSPARC. The cryo-EM structure of the NiV-F ectodomain (Protein Data Bank [PDB]: 6TYS) and crystal structure of the Fab (PDB: 7EJY) were aligned with the cryo-EM density map using UCSF Chimera |
| 4 | 4hvt | 3s6m, 5tnx | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.8b00777 | SPOT-peptide: Template-based prediction of peptide-binding proteins and peptide-binding sites | 2019 | T Litfin, Y Yang, Y Zhou- Journal of chemical information and, 2019 - ACS Publications | test set taken from another structure -based peptide-binding site predictor, SPRINT- peptide11 Structural genomics targets (SG4444) 11,813 proteins involved in structural genomics studies were collected from the PDB plate primarily based on domain-level structural similarity |
| 5 | 4g50 | - | https://opus.bibliothek.uni-wuerzburg.de/files/32189/Scheuplein_Nicolas_Julian_D... | Fluorescent probe for the identification of potent inhibitors of the macrophage infectivity potentiator (Mip) protein of Burkholderia pseudomallei | 2023 | T Lohr, M Vivoli Vega, D Ankrett- Inhibitors of the - opus.bibliothek.uni-wuerzburg.de | corresponding co-crystal structures with BpMip; PDB ID 5V8T for 2 and PDB ID 4G50 for 3. in pink in the chemical structure . As can be seen from the crystal structures , in each case, the |
| 6 | 3d64 | 3n58 | http://scripts.iucr.org/cgi-bin/paper?S1399004715018659 | An enzyme captured in two conformational states: crystal structure of S-adenosyl-l-homocysteine hydrolase from Bradyrhizobium elkanii | 2015 | T Manszewski, K Singh, B Imiolczyk - Section D: Biological , 2015 - scripts.iucr.org | ... pseudomallei (Seattle Structural Genomics Center for Infectious Disease, unpublished work,PDB entry 3d64 ), Brucella melitensis (unpublished work, PDB entry 3n58 ... Here, we present thefirst crystal structure of SAHase from a nodulating bacterium, Bradyrhizobium ... |
| 7 | 4jcp | - | https://www.nature.com/articles/s41598-018-23821-5 | Structural basis of interaction between dimeric cyclophilin 1 and Myb1 transcription factor in Trichomonas vaginalis | 2018 | T Martin, YC Lou, CC Chou, SY Wei, S Sadotra- Scientific reports, 2018 - nature.com | S1). Like Caenorhabditis elegans Cyp3 (Ccyp3; PDB : 1DYW) and Brugia malayi CypB (BcypB; PDB : 4JCP ), TvCyP1 is a divergent loop cyclophilin and possesses an additional loop in the a) Structure of TvCyP1 dimer showing secondary structural elements ( PDB : 5YB9 |
| 8 | 3q8h | - | http://pubs.acs.org/doi/abs/10.1021/jm5010978 | Development of Inhibitors of the 2 C-Methyl-d-erythritol 4-Phosphate (MEP) Pathway Enzymes as Potential Anti-Infective Agents | 2014 | T Masini, AKH Hirsch - Journal of medicinal chemistry, 2014 - ACS Publications | ... ofhe cocrystal structure of 81 with B. pseudomallei IspF (PDB code 3Q8H, Figure 4) shows that there is no direct interaction of 81 with the catalytic Zn2+ cation, but the presence of the bicyclic aromatic ring, engaged in hydrophobic interactions, probably compensates for this lack, resulting in a strong affinity of 81 or B. pseudomallei IspF. ... |
| 9 | 4qfh | 4g7f, 4gie | https://www.mdpi.com/2218-273X/9/9/484 | Insights into Ergosterol Peroxide's Trypanocidal Activity | 2019 | T Meza-Menchaca, A Ramos-Ligonio- Biomolecules, 2019 - mdpi.com | \To identify potential Tc proteins that might directly interact with ergosterol peroxide, an inverse-docking screening was performed on a subset of Tc protein crystallography structures.. Table 1. The best matches between T. cruzi proteins and ergosterol peroxide in descending order of ∆G predictive value ... Dihydroorotate dehydrogenase 4QFH 3W1R −9.1 −11.17 6.407 |
| 10 | 4n0w | - | http://peds.oxfordjournals.org/content/early/2015/05/17/protein.gzv026.short | Conserved water molecules in bacterial serine hydroxymethyltransferases | 2015 | T Milano, ML Di Salvo, S Angelaccio… - … Design and Selection, 2015 - Oxford Univ Press | ... After PDB scrutiny, 11 structures were selected on the basis of better resolution, the absenceof point ... (2003) and Mustata and Briggs (2004) who analyzed the structural role of ... MD simulationswere carried out on the dimer in the apo form of the structure 4N0W corresponding to ... |