We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8W0J | 2024 | 0 |
| 8W0L | 2024 | 0 |
| 8W0M | 2024 | 0 |
| 8W20 | 2024 | 0 |
| 8W21 | 2024 | 0 |
| 8W22 | 2024 | 0 |
| 9ASD | 2024 | 0 |
| 9ATM | 2024 | 0 |
| 9AU2 | 2024 | 0 |
| 9AV6 | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7jx3 | - | https://www.nature.com/articles/s42003-023-04782-6 | Structural basis of spike RBM-specific human antibodies counteracting broad SARS-CoV-2 variants | 2023 | K Shitaoka, A Higashiura, Y Kawano- Communications, 2023 - nature.com | package with the combination of RBD structure ( PDB ID:7EAM) and Fab structures ( PDB ID:7CHB and 7CHP) as search models. The structure refinement was performed using the ... Class 3b/S309 (PDB ID:7JX3), Class 4a/CR3022 (PDB ID:6ZLR), Class 4b/S2X259 (PDB ID:7M7W), and Class 5/S2H97 (PDB ID:7M7W) open data were used in Fig. 3a. |
| 2 | 6ml8 | - | https://www.nature.com/articles/s42003-023-04793-3 | Structural insights into the broad protection against H1 influenza viruses by a computationally optimized hemagglutinin vaccine | 2023 | JV Dzimianski, J Han, GA Sautto, SM O'Rourke- Communications, 2023 - nature.com | a Closeup of Asn127 of COBRA P1 overlayed with structures of CA/04/09 ( PDB 3LZG) and DV/1/57 bound to the RBS-targeting antibody C05 ( PDB 6ML8 ). b Biolayer interferometry of |
| 3 | 3hzg | - | https://www.nature.com/articles/s42003-023-05227-w | Biosynthesis of ansamitocin P-3 incurs stress on the producing strain Actinosynnema pretiosum at multiple targets | 2023 | Q Huang, X Zhang, Z Guo, X Fu, Y Zhao- Communications, 2023 - nature.com | FDTS and dTGD were aligned to 3hzg and 1r66, which form a homo-tetramer and homo- The molecular structure of AP-3 was obtained from the PDB database ( PDB ID: 7e4p). |
| 4 | 3p96 | - | https://www.nature.com/articles/s42003-023-05402-z | A morpheein equilibrium regulates catalysis in phosphoserine phosphatase SerB2 from Mycobacterium tuberculosis | 2023 | E Pierson, F De Pol, M Fillet, J Wouters- Communications Biology, 2023 - nature.com | structure 14 ( PDB : 3P96 ). The residues are exposed to solvent and not engaged in intramolecular interactions. The difference in numbering comes from the fact that MaSerB bears two |
| 5 | 6c9e | - | https://www.nature.com/articles/s42003-024-07299-8 | The structural and functional analysis of mycobacteria cysteine desulfurase-loaded encapsulin | 2024 | Y Tang, Y Liu, M Zhang, W Lan, M Ma, C Chen- Communications, 2024 - nature.com | ( PDB 6C9E ) as the initial model. Model building and refinement was performed within Coot 0.8.9.2 and Phenix 1.14, respectively. The final refined models were validated by MolProbity |
| 6 | 7so9 | - | https://www.nature.com/articles/s42003-024-07350-8 | The identification of a SARs-CoV2 S2 protein derived peptide with super-antigen-like stimulatory properties on T-cells | 2025 | TH Tu, FE Bennani, N Masroori, C Liu- Communications, 2025 - nature.com | PDB IDs: 2XN9 62 and 4C56 63 were used, 2XN9 and 4C56 were attached with two crystal structures the complex HLA I-TCR, we used the PDB IDs 3PWP 64 . ... PDB IDs of the variants of SARS-CoV 2 used for homology modeling: Alpha_(B.1.1.7) (7R1A), Beta_(B.1.351) (7Q6E), Gamma_(P.1) (7V83), Delta_(B.1.617.2) (7SO9), Omicron_(B.1.529) (7WPA). |
| 7 | 3ndn | - | https://www.nature.com/articles/s42003-025-08051-6 | A pH-dependent direct sulfhydrylation pathway is required for the pathogenesis of Mycobacterium tuberculosis | 2025 | VK Nain, V Barik, M Pandey, M Pareek- Communications, 2025 - nature.com | For system preparation, the crystal structure of putative O-succinyl homoserine sulfhydrylase of M. tuberculosis was retrieved from RCSB PDB 56 ( PDB -ID: 3NDN 57 ). The protein has 4 |
| 8 | 7sh3 | - | https://www.nature.com/articles/s42004-023-01029-7 | Peptide binder design with inverse folding and protein structure prediction | 2023 | P Bryant, A Elofsson- Communications Chemistry, 2023 - nature.com | ProteinMPNN was trained on assemblies in the PDB these to unique PDB IDS, one finds 4086 PDB IDS in total. from all PDB IDs and extracted interacting pairs (one per PDB ID) based ... To see if the modification of the AF protocol described here can distinguish these binders, we analyse sequences tested against four different receptor proteins with solved receptor-binder structures ... IL7Ra: https://www.rcsb.org/structure/7OPB and VirB8:https://www.rcsb.org/structure/7SH3). |
| 9 | 3v7o | - | https://www.nature.com/articles/srep23743?WT.feed_name=subjects_genetics | Conserved differences in protein sequence determine the human pathogenicity of Ebolaviruses | 2016 | M Pappalardo, M Juli, MJ Howard, JS Rossman- Scientific reports, 2016 - nature.com | ... of both Ebola virus ( PDB structure 2I8B) and Reston virus ( PDB structure 3V7O ) VP30 are ... Structural data are available for both the Ebola virus and Reston virus VP35 ... These structures are highly conserved, however functional studies have demonstrated that Reston virus VP35 ... |
| 10 | 3m4s | - | https://www.nature.com/articles/srep30494 | Crystal structures of RidA, an important enzyme for the prevention of toxic side products | 2016 | X Liu, J Zeng, X Chen, W Xie- Scientific reports, 2016 - nature.com | 2DYY, dirty violet), and Entamoeba histolytica l-PSP ( PDB code 3M4S , gray) respectively unpublished), and a putative endoribonuclease l-PSP from Entamoeba histolytica ( PDB code3M4S, unpublished AtRidA is highly similar to other RidA family members in structure , and their |