Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
9AV7	2024	0
9AZZ	2024	0
9B0M	2024	0
9B1Z	2024	0
9B20	2024	0
9B21	2024	0
9B22	2024	0
9B2C	2024	0
9BCI	2024	0
9BJL	2024	0

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	6cfp	-	https://www.tandfonline.com/doi/abs/10.1080/07391102.2020.1806112	New anti-viral drugs for the treatment of COVID-19 instead of favipiravir	2020	A Akta, B Tzn, R Aslan, K Sayin- Biomolecular Structure, 2020 - Taylor & Francis	According to Table 2, the 6CFP protein is not inhibited by any ligands RNA polymerase proteins with PDB IDs of 6NUR and 6NUS were reported in late 2019 and early In this calculation, the ligand and protein are flexible and solvent molecules surround the entire structure
2	6cja	-	https://www.nature.com/articles/s41589-025-01954-9	Terminal alkyne formation by a pyridoxal phosphate-dependent enzyme	2025	JB Hedges, JA Marchand, C Calv-Tusell- Nature Chemical, 2025 - nature.com	PDB 6CJA , we then superposed the structure of the second adjacent monomer from the PDB 6CJA catalytic dimer onto the structure residues present in the structure of the N terminus of
3	6cum	-	https://onlinelibrary.wiley.com/doi/abs/10.1107/S2059798321004368	Introduction to molecular replacement: a time perspective	2021	E Dodson- Acta Crystallographica Section D: Structural, 2021 - Wiley Online Library	the phase error between the correct value and the phases generated from the best solution; Dphi_DM, the phase error after density modification, which was performed with Parrot, except for PDB entry 6cum , which used Rebuilt?, Yes if the test structure could be rebuilt
4	6cw5	-	https://ubipayroll.com/earthline/index.php/ejcs/article/view/282	In silico Structural Modelling of Ribokinase from Salmonella Typhi	2021	H Abubakar, Y Ndatsu, AD Musa, C Ogbiko- Earthline Journal of, 2021 - ubipayroll.com	done to check the stereochemical features of the predicted 3-dimensional structure of the BLASTp showed low identity of 40% (Table 1) with other proteins deposited in PDB and conserved domain (Figure 1). Multiple sequence alignment between the query, 6CW5 , 2FV7, 1VM7
5	6cw5	-	https://www.sciencedirect.com/science/article/pii/S0141813019319464	Unraveling structural insights of ribokinase from Leishmania donovani	2019	S Gatreddi, V Pillalamarri, D Vasudevan- International journal of, 2019 - Elsevier	Z-score 42.3; rmsd 2.1 for 307 C atoms), C. neoformans ( PDB ID: 6CW5 , Z-score 36.5; rmsd 2.7 for 290 C atoms) and adenosine kinase of A. tumefaciens ( PDB ID: 2RBC of a five amino acid stretch was observed at the two positions in the primary structure of LdRK
6	6cy1	-	https://www.sciencedirect.com/science/article/pii/S0141813020353630	Essential biochemical, biophysical and computational inputs on efficient functioning of Mycobacterium tuberculosis H37Rv FtsY	2021	MK Ekka, LS Meena- International Journal of Biological Macromolecules, 2021 - Elsevier	FtsY is comprised of helices, but this structural pattern was shown to change these ligands cause significant conformational change by variating the secondary structure to transduce GTP-binding proteins. SRP signal recognition particle. PDB protein data bank. fts filamentous
7	6d6j	3oj7	https://pubs.acs.org/doi/abs/10.1021/acs.jcim.9b00407	Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc (II)-Binding Residues in Sites with Four Protein Ligands	2019	M Macchiagodena, M Pagliai, C Andreini- Journal of chemical, 2019 - ACS Publications	quantum mechanical calculations on a training set of high-quality protein structures , encompassing the in the catalytic reaction of enzymes, by stabilizing the tertiary/quaternary structure of a cells.(5,7) The high thermodynamic stability of the tetrahedral zinc(II) structural sites in
8	6d8w	-	https://www.sciencedirect.com/science/article/pii/S1201971219304175	Molecular insights into evolution, mutations and receptor-binding specificity of influenza A and B viruses from outpatients and hospitalized patients in	2020	FX Ivan, X Zhou, SH Lau, S Rashid, JSM Teo- International Journal of, 2020 - Elsevier	Structural analyses of receptor-binding specificity Then, sialotrisaccharide 3'SLN and 6'SLN isolated from co-crystallized HA-ligand structures in Protein Data Bank ( PDB ) were respectively used as the avian and human receptor analogs to assess receptor-binding
9	6d8w	6n41	https://www.tandfonline.com/doi/abs/10.1080/21645515.2019.1653743	Computationally optimized broadly reactive vaccine based upon swine H1N1 influenza hemagglutinin sequences protects against both swine and human isolated	2019	AL Skarlupka, SO Owino- Human vaccines &, 2019 - Taylor & Francis	The known crystal structure were used for A/California/07/2009 ( PDB accession: 3lzg23) and A/Swine/Indiana/P12439/2000 templates were chosen for model building.29 The crystal struc- tures of A/Jiangsu/ALSI/2011 (H1N1) HA ( PDB accession: 6d8w ) was selected
10	6d9y	-	https://www.nature.com/articles/s41598-024-65627-8	Crystal structure of l-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a -furanosyl hemiketal of substrates	2024	M Akagashi, S Watanabe, S Kwiatkowski, J Drozak- Scientific Reports, 2024 - nature.com	Although the crystal structure of l-KDRDH was unavailable, the closest related structure in the PDB , the hypothetical SDR protein from Burkholderia phymatum ( 6D9Y ; not yet published)