We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4dz4 | - | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0248991 | Structure of the E. coli agmatinase, SPEB | 2021 | I Chitrakar, SF Ahmed, AT Torelli, JB French- Plos one, 2021 - journals.plos.org | The first stage used the default parameters with the structure of Burkholderia thailandensis hypothetical agmatinase ( 4DZ4 ) [34] as To place the ligand in the SPEB active site, the structure of the D. radiodurans agmatinase with bound hexane-1,6-diamine ( PDB code 1WOG |
| 2 | 6tz8 | - | https://www.currentscience.ac.in/data/forthcoming/206.pdf | Uneditedversion published onlineon 15/7/2021 | 2021 | G Biswas, R Banerjee - currentscience.ac.in | exclusively with P2, while P1 mediates molecular recognition and binding, as evident from the crystal structures of (truncated) SurA-peptide complexes46 The crystal structure of CaEss1 showed structural similarity to the human PIN1 protein except for the |
| 3 | 4jv3 | 4f32 | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.0c00653 | Semisynthesis and Biological Evaluation of Platencin Thioether Derivatives: Dual FabF and FabH Inhibitors against MRSA | 2021 | Y Li, X Weng, Y Deng, J Pan, S Zhu- ACS medicinal, 2021 - ACS Publications | The discovery and clinical use of multitarget monotherapeutic antibiotics is regarded as a promising approach to reduce the development of antibiotic resistance. Platencin (PTN), a potent natural a... On the basis of the X-ray structures of PTN with ecFabF(C163Q), Burkholderia vietnamiensis FabF, and Brucella melitensis FabB (PDB IDs 3HO2, 4F32, and 4JV3, respectively) as well as that of platencin A1 with ecFabF-(C163Q) (PDB ID 3HO9), it is likely that these PTN derivatives may also interact with FabF or |
| 4 | 6vyb | - | https://www.mdpi.com/1034566 | Metal-Bound Methisazone; Novel Drugs Targeting Prophylaxis and Treatment of SARS-CoV-2, a Molecular Docking Study | 2021 | A Abdelaal Ahmed Mahmoud M Alkhatip- International Journal of, 2021 - mdpi.com | SARS-CoV-2 currently lacks effective first-line drug treatment. We present promising data from in silico docking studies of new Methisazone compounds (modified with calcium, Ca; iron, Fe; magnesium, Mg; manganese, Mn; or zinc, Zn) designed to bind more strongly to key proteins ... We found that the highest binding interactions were found with the spike protein (6VYB), with the highest overall binding being observed with Mn-bound Methisazone at −8.3 kcal/mol, |
| 5 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.02.17.431625v1.abstract | A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features | 2021 | S Fatihi, S Rathore, A Pathak, D Gahlot, M Mukerji- bioRxiv, 2021 - biorxiv.org | Cryo-EM structures of the D614G spike structure have revealed that the mutant D614 is stable with RBD in an up mational states of the spike were analysed (see Methods for PDB ids) spike conformers showed large structural changes, with an average deviation of 2.77 0.42 ... 18 cryo-EM structures for closed spike conformation (PDB ID: 6ZGE, 6VXX, 6X2C, 6X6P, 6X29, 6X79, 6XF5, 6XLU, 6XM5, 6ZB4, 6ZB5, 6ZGI, 6ZP0, 7CAB, 7DDD, 7DF3, 7JJI and 7JWY) were taken from RCSB P |
| 6 | 6bfu | - | https://journals.asm.org/doi/abs/10.1128/JVI.02284-20 | Insight into Vaccine Development for Alphacoronaviruses Based on Structural and Immunological Analyses of Spike Proteins | 2021 | Y Shi, J Shi, L Sun, Y Tan, G Wang, F Guo- Journal of, 2021 - Am Soc Microbiol | (B) Overall structure comparison of coronavirus S-trimers. The S-trimer structures of HCoV-229E ( PDB ID: 6U7H), HCoV-NL63 ( PDB ID: 5SZS), PEDV ( PDB ID: 6U7K), FIPV ( PDB ID: 6JX7), PDCoV ( PDB ID: 6BFU ), IBV ( PDB ID: 6CV0), SARS-CoV ( PDB ID: 5X5B), SARS |
| 7 | 7jw0 | - | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.1c00372 | Dynamic Profiling of Binding and Allosteric Propensities of the SARS-CoV-2 Spike Protein with Different Classes of Antibodies: Mutational and Perturbation-Based | 2021 | G Verkhivker, S Agajanian, D Oztas- Journal of Chemical, 2021 - ACS Publications | The functional adaptability and conformational plasticity of SARS-CoV- 2 spike proteins allow for the efficient modulation of complex phenotypic responses to the host receptor and antibodies. In thi... |
| 8 | 7jv2 | 7jva | https://www.cell.com/cell-reports/pdf/S2211-1247(21)01652-1.pdf | Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding | 2021 | D Mannar, JW Saville, X Zhu, SS Srivastava- Cell reports, 2021 - cell.com | See Table S2 for PDB entries included in this analysis. (D) Structural overlap of all antibodies selected on the SARSCoV-2 RBD. Mutational positions within the RBD are highlighted. (E) |
| 9 | 4gl8 | - | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1009180 | Host-specific functional compartmentalization within the oligopeptide transporter during the Borrelia burgdorferi enzootic cycle | 2021 | AM Groshong, MA McLain, JD Radolf- PLoS pathogens, 2021 - journals.plos.org | Structural homology models demonstrated variations within the binding pockets of OppA1, 2, and 5 indicative of different peptide repertoires We used larval immersion feeding [43] to confirm that oppA1 is essential for structural integrity of the spirochete during the blood meal |
| 10 | 4hr2 | - | https://www.nature.com/articles/s41594-020-00530-0 | Structures of radial spokes and associated complexes important for ciliary motility | 2021 | M Gui, M Ma, E Sze-Tu, X Wang, F Koh- Nature Structural &, 2021 - nature.com | In motile cilia, a mechanoregulatory network is responsible for converting the action of thousands of dynein motors bound to doublet microtubules into a single propulsive waveform. Here, we use two complementary cryo-EM strategies to determine structures of the major |