We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6wsa | 3ppi, 3oxk, 3kcq, 4w5k, 3sgw, 4rgb, 4ghk | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0257318 | Principal component analysis of alpha-helix deformations in transmembrane proteins | 2021 | A Bevacqua, S Bakshi, Y Xia- PloS one, 2021 - journals.plos.org | 6tt4, 6txw, 6tzj, 6uqw, 6v47, 6vbj, 6vie, 6vjd, 6vmz, 6vnw, 6w1w, 6w2x, 6wok, 6wsa , 6x1q, 6x2m and the contribution of each physical deformation to the overall flexibility of the secondary structure N -helices of a given length (L residues) were collected from PDB entries (See |
| 2 | 4nbr | - | https://pubs.acs.org/doi/abs/10.1021/acs.jcim.0c01343 | PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations | 2021 | F Adasme-Carreno, J Caballero- Journal of Chemical, 2021 - ACS Publications | Inf. Model. 2021, 61, 4, 1789-1800. ADVERTISEMENT. RETURN TO ISSUEPREVComputational Chemis...Computational ChemistryNEXT. Journal Logo. PSIQUE: Protein Secondary Structure Identification on the Basis of Quaternions and Electronic Structure Calculations |
| 3 | 5udf | - | https://www.nature.com/articles/s41594-021-00573-x | Structural basis for bacterial lipoprotein relocation by the transporter LolCDE | 2021 | X Tang, S Chang, K Zhang, Q Luo, Z Zhang- Nature Structural &, 2021 - nature.com | Advertisement. Advertisement. Nature Structural & Molecular Biology. View all journals; Search; My Account Login. Explore content; Journal information; Publish with us Structural basis for bacterial lipoprotein relocation by the transporter LolCDE |
| 4 | 7jv2 | 7k43, 7jva, 7km8 | https://www.science.org/doi/abs/10.1126/science.abh1139 | Structural and functional ramifications of antigenic drift in recent SARS-CoV-2 variants | 2021 | M Yuan, D Huang, CCD Lee, NC Wu, AM Jackson- Science, 2021 - science.org | We therefore investigated the structural and functional 4 ( PDB 6XEY) (27) are shown in pink and light pink, respectively; S2M11 ( PDB 7K43) (30) in orange and yellow; C121 ( PDB 7K8X |
| 5 | 6ws6 | - | https://www.frontiersin.org/articles/10.3389/fimmu.2021.652223/full | CAR-NK Cells Effectively Target SARS-CoV-2-Spike-Expressing Cell Lines In Vitro | 2021 | MT Ma, S Badeti, CH Chen, J Kim- Frontiers in, 2021 - frontiersin.org | Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) is highly contagious and presents a significant public health issue. Current therapies used to treat coronavirus disease 2019 (COVID-19) include monoclonal antibody cocktail, convalescent plasma, antivirals ... Plasmid construct of S309-CAR. The SFG retroviral vector contains the S309 single chain antibody fragment (accession code 6WS6 on PDB) |
| 6 | 7jzl | - | https://www.sciencedirect.com/science/article/pii/S0022283621003892 | A brief history of de novo protein design: minimal, rational, and computational | 2021 | DN Woolfson- Journal of Molecular Biology, 2021 - Elsevier | For comparison, the whole PDB is doubling in size approximately every 67 years. There are now over 100 structures of de novo peptides and proteins, which is a good resource ... Figure 2. A gallery of high-resolution de novo designed peptide and protein structures .. additional protein chains are shown in grey these are for protein fusions to the designs (6FES99) or with targeted protein-protein interactions (4OYD,5VID,6IWB,6XXV,7JZL,6YWC) |
| 7 | 7jv2 | 7jx3 | https://pubs.acs.org/doi/abs/10.1021/acscentsci.1c00216 | Molecular Aspects Concerning the Use of the SARS-CoV-2 Receptor Binding Domain as a Target for Preventive Vaccines | 2021 | Y Valdes-Balbin, D Santana-Mederos- ACS Central, 2021 - ACS Publications | The development of recombinant COVID-19 vaccines has resulted from scientific progress made at an unprecedented speed during 2020. The recombinant spike glycoprotein monomer, its trimer, and its re... Structural analyses were performed from PDB: 6M0J for the complex ACE2–RBD, (9) PDB: 7BZ5 for B38, (85) PDB: 7BYR for BD23, (86) PDB: 6XEY for Fab2-4, (87) PDB: 7BWJ for P2B-2F6, (88) PDB: 7JV2 for S2H13 |
| 8 | 5ha4 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jmr.2894 | In silico prediction, molecular docking and binding studies of acetaminophen and dexamethasone to Enterococcus faecalis diaminopimelate epimerase | 2021 | H Singh, S Das, J Yadav, VK Srivastava- Journal of Molecular, 2021 - Wiley Online Library | are also available in the PDB , but are to date otherwise unpublished, including Acinetobacter baumannii ( PDB : 5HA4 ), Bacillus anthracis ( PDB : 2OTN structural and functional studies of DAP epimerase from different organisms have reported that the structure consists of |
| 9 | 6ws6 | - | https://sciendo.com/pdf/10.2478/rrlm-2021-0022 | Insights into Innate Immune Response Against SARS-CoV-2 Infection | 2021 | A Huanu, AM Georgescu, AV Andrejkovits- Revista Romn de, 2021 - sciendo.com | The NET structure made by activated neutrophils and mediated by reactive oxygen species bacterial lipopolysaccharides (LPS), flagella, cilia, bacterial unmethylated DNA, or viral structures like dsARN or In addition, sev- eral structural and non- structural SARS-CoV-2 proteins |
| 10 | 7jx3 | 7k3q, 7r7n | https://www.nature.com/articles/s41586-021-03807-6 | SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape | 2021 | TN Starr, N Czudnochowski, Z Liu, F Zatta, YJ Park- Nature, 2021 - nature.com | An ideal therapeutic anti-SARS-CoV-2 antibody would resist viral escape13, have activity against diverse sarbecoviruses47, and be highly protective through viral neutralization... Structures used were those described in this paper, or previously published structures: ACE2-bound RBD (6M0J)60, CR3022-bound RBD (6W41)61, REGN10987- and REGN10933-bound RBD (6XDG)62, CB6- (LY-CoV016) bound RBD (7C01)63, and S304, S309 and S2H14-bound RBD (7JX3)15. |