We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2lwk | - | http://pubs.acs.org/doi/abs/10.1021/acs.jcim.5b00593 | Can Holo NMR Chemical Shifts be Directly Used to Resolve RNA-Ligand Poses? | 2016 | AT Frank - Journal of Chemical Information and Modeling, 2016 - ACS Publications | ... shift data within standard procedures to aid in efficiently determining the 3D structure ofRNA-ligand complexes by acting as an additional source of structural information that is 4 Page4 of 30 ... promoter-DPQ complex (PDBID: 2LWK, BMRBID: 18633)37 (see Fig. 1). ... |
| 2 | 4h3e | 4lsm | https://chemistry-europe.onlinelibrary.wiley.com/doi/abs/10.1002/cmdc.202500408 | Sertraline as a Scaffold for Antitrypanosoma Cruzi Drug Development: Design of Novel Derivatives and Computational Target Screening | 2025 | AS Mijoba, Z Blanco, NJ ParraGimnez- , 2025 - Wiley Online Library | For this analysis, we selected a panel of 14 key therapeutic targets involved in T. cruzi's physiological functions. The studied target proteins included: ...glyceraldehyde-3-phosphate dehydrogenase (4LSM)... superoxide dismutase (4H3E), trypanothione reductase (1AOG), and phosphodiesterase C (3V94). |
| 3 | 4o6r | - | http://scripts.iucr.org/cgi-bin/paper?s1399004715004228 | Structural and functional analysis of betaine aldehyde dehydrogenase from Staphylococcus aureus | 2015 | AS Halavaty, RL Rich, C Chen, JC Joo… - … Section D: Biological …, 2015 - scripts.iucr.org | ... DALI (Holm & Rosenstro¨ m, 2010) analysis found a putative ALDH from Burkholderia cenocepacia (PDB entry 4o6r; Seattle Structural Genomics Center for Infectious Disease, unpublished work) to be the closest structural homolog of SaBADH (Z-score of 59.6; r.m.s.d. of 1.3 A ° ; 38% sequence homology)... |
| 4 | 4gl8 | - | https://kuscholarworks.ku.edu/handle/1808/25891 | INVESTIGATION OF THE LIPOPROTEOME OF THE LYME DISEASE BACTERIUM BORRELIA BURGDORFERI | 2017 | AS Dowdell - 2017 - kuscholarworks.ku.edu | lipoproteins, such as OspA (88, 89). Structural analysis of Lp6.6 showed that it exists primarily in aggregation-prone -helices and disordered stretches, and it is hypothesized that its unconstrained tertiary structure may be important for its biological role (90). Another similarly |
| 5 | 5kha | 4f4h | http://www.jbc.org/content/early/2018/03/26/jbc.RA118.002241.short | Kinetics and structural features of dimeric Gln-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites | 2018 | ARS Santos, ECM Gerhardt, VR Moure- Journal of Biological, 2018 - ASBMB | -Proteobacterium Burkholderia thailandensis ( PDB 4F4H) and from the -Proteobacterium Acinetobacter baumannii ( PDB 5KHA ) of dimeric NadE2Gln Given the availability of a 1.7 resolution structure of dimeric NadE2Gln from B. thailandensis ( PDB 4F4H) obtained |
| 6 | 4f4h | 5kha | http://www.jbc.org/content/293/19/7397.short | Kinetics and structural features of dimeric glutamine-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites | 2018 | ARS Santos, ECM Gerhardt, VR Moure- Journal of Biological, 2018 - ASBMB | Given the availability of a 1.7 resolution structure of dimeric NadE2 Gln from B. thailandensis ( PDB code 4F4H ) obtained by the Burkholderia structome project (21), we used this protein to analyze the structural features of the subgroup of dimeric NadE2 Gln |
| 7 | 4f4h | - | http://acervodigital.ufpr.br/handle/1884/43806 | Caracterizao de enzima nad sintetase (NADE2) de herbaspirillum seropedicae | 2016 | ARS Santos - 2016 - acervodigital.ufpr.br | ... Outras NAD sintetases de procariotos com domínio glutaminase como a de Cytophaga hutchinsonii (número PDB 3ILV) e Burkholderia thailandensis (número PDB 4F4H), possuem estruturas cristalinas determinadas e depositadas no banco de dados PDB. ... |
| 8 | 3laa | 3la9 | https://link.springer.com/article/10.1007/s00430-019-00652-3 | Recent advances in the understanding of trimeric autotransporter adhesins | 2019 | AR Kiessling, A Malik, A Goldman- Medical Microbiology and Immunology, 2019 - Springer | ring (Orange) domains. c Top view of Hia BD1( PDB ID:1S7M) rep- resenting tryptophan side chain from each monomer. d Structure of BpaA ( PDB ID: 3LAA ) representing FGG (Violet purple), short neck (Olive), head (Teal), long neck (Blue) domains |
| 9 | 3pm6 | - | http://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=4202&context=etd#page=25 | Chapter 2. Aldolase oligomerization relates to specific dynamics essential to carry out its function | 2013 | AR Katebi, RL Jernigan, LHB Center - Building and simulating protein machines, 2013 - lib.dr.iastate.edu | ... used in the multiple sequence alignment, we use subunits from the following PDB Ids: B. anthracis?3Q94; C. immitis?3PM6; C. jejune ... software suite [13-15] to model the missing loop regions of the FBA structures retrieved from the Protein Data Bank [16 ... E. coli FBA: PDB Id?1ZEN ... |
| 10 | 3gvg | 3krs | http://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=4202&context=etd#page=63 | Chapter 3. Triosephosphate Isomerase Structure Space Diversity: oligomerization, dynamics, and functionality - an evolutionary perspective. | 2013 | AR Katebi, RL Jernigan - Building and simulating protein machines, 2013 - lib.dr.iastate.edu | ... TIM Structure Database: We have downloaded 121 TIM structures from the Protein Data Bank (PDB)(www. ... 105 PDB ids of the TIM structures that are used to extract these 263 chains ... 2VFF 2VFG 2VFH 2VFI 2VOM 2VXN 2WSQ 2X1R 2X1S 2X1T 2X1U 2YPI 3GVG 3KRS 3M9Y ... |