We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3KX6 | 2009 | 5 |
| 3KW3 | 2009 | 10 |
| 3KRS | 2009 | 13 |
| 3KRE | 2009 | 7 |
| 3KRB | 2009 | 11 |
| 3KNU | 2009 | 3 |
| 3KM3 | 2009 | 11 |
| 3KJR | 2009 | 6 |
| 3KHW | 2010 | 12 |
| 3KHP | 2009 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gka | - | https://link.springer.com/article/10.1007/s00253-019-10287-2 | Two new ene-reductases from photosynthetic extremophiles enlarge the panel of old yellow enzymes: CtOYE and GsOYE | 2020 | MS Robescu, M Niero, M Hall, L Cendron- Applied Microbiology, 2020 - Springer | The most peculiar structural features of each enzyme are depicted in bright orange (loop 3 In the active site of GsOYE structure , a chloride anion, present in the crystallization In the structures of the GsOYE complexes, both para-hydroxybenzaldehyde (pHBA; PDB : 6S31) (Fig |
| 2 | 3gka | - | http://www.teses.usp.br/teses/disponiveis/76/76132/tde-24032014-151614/en.php | Estudo estrutural das enzimas Topoisomerase II Mitocondrial e Old Yellow Enzyme de Trypanosoma cruzi | 2014 | NC Rodrigues - teses.usp.br | ... resolution of 1.27 and 2.00 , respectively. The atomic coordinates and structure factors of the TcOYE structure in P212121 and P21 crystalline forms have been deposited in the Protein DataBank with the accession codes 4E2B and 4E2D, respectively. TcOYE displays a ... |
| 3 | 3gka | - | http://www.sciencedirect.com/science/article/pii/S0301462213001397 | Structural studies of the< i> Trypanosoma cruzi</i> Old Yellow Enzyme: Insights into enzyme dynamics and specificity | 2013 | MT Murakami, NC Rodrigues, LM Gava? - Biophysical Chemistry, 2013 - Elsevier | ... of the TcOYE structure in P2 1 2 1 2 1 and P2 1 crystalline forms have been deposited in the Protein Data Bank with the ... ? rmsd over 348 C? atoms - PDB code: 2GOU) and Burkholderia pseudomallei (BpOYE - 1.24 ? rmsd over 341 C? atoms - PDB code: 3GKA) revealed a ... |
| 4 | 3gka | - | http://onlinelibrary.wiley.com/doi/10.1002/cbic.201200404/abstract | Crystal Structure Determination and Mutagenesis Analysis of the Ene Reductase NCR | 2012 | S Reich, HW Hoeffken, B Rosche, BM Nestl? - ChemBioChem, 2012 - Wiley Online Library | ... Figure 1. Crystal structure of the ene reductase NCR (PDB ID: 4A3U) dis- played in cartoon representation and showing prosthetic ... in the Supporting Infor- mation), 12-oxophytodienoate reductases 1 and 3 (OPR1 and OPR3) and N-ethylmaleimidine reductase (3GKA) from the ... |
| 5 | 3ge4 | - | http://www.sciencedirect.com/science/article/pii/S0006349511009374 | Relation between molecular shape and the morphology of self-assembling aggregates: a simulation study | 2011 | R V?cha, D Frenkel - Biophysical journal, 2011 - Elsevier | Supporting Material Figure2.: A cut through the middle of a protein vesicle formed as bilayer of alpha-helices (3GE4 in Protein Database), where alpha-helices are visualised as rods and unstructured loops as wires |
| 6 | 3gbz | - | http://www.sciencedirect.com/science/article/pii/S0022283613004518 | The N-terminal extension of UBE2E ubiquitin conjugating enzymes limits chain assembly | 2013 | FR Schumacher, G Wilson, CL Day - Journal of molecular biology, 2013 - Elsevier | ... (a) Overlay of the core domain of UBE2E1 (3GBZ) onto the structure of UBE2D2~Ub conjugate (PDB: 3A33). The interaction between ubiquitin from one molecule, shown as a ribbon (teal) and a surface, and the backside of UBE2D2 (teal ribbon) is shown. ... |
| 7 | 3gbz | - | https://pubs.rsc.org/en/content/articlehtml/2020/me/c9me00097f | How evolution designs functional free energy landscapes of proteins? A case study on emergence of regulation in CDK family kinases. | 2020 | Z Shamsi, D Shukla- Molecular Systems Design & Engineering, 2020 - pubs.rsc.org | structures of CDK2 ( PDB ID: 5OSM, 6Q3F, 6Q4A, 6Q4B, 6Q4C, 6Q4D, 6Q4K), G/CDK ( PDB ID: 3GBZ ), and pfpk5 structures are native-like based on GA341 score and have comparable DOPE score with CDK2 native structure as shown in PDB ID for CMGI for native CDK2 score |
| 8 | 3gbz | - | https://pubs.rsc.org/--/content/articlehtml/2020/me/c9me00097f | How does evolution design functional free energy landscapes of proteins? A case study on the emergence of regulation in the Cyclin Dependent Kinase family | 2020 | Z Shamsi, D Shukla- Molecular Systems Design & Engineering, 2020 - pubs.rsc.org | PDB ID: 5OSM, 6Q3F, 6Q4A, 6Q4B, 6Q4C, 6Q4D, 6Q4K), G/CDK ( PDB ID: 3GBZ ), and pfpk5 on the GA341 score and have comparable DOPE scores with the CDK2 native structure as shown Template's PDB ID, DOPE score for CMGI, DOPE score for native CDK2, GA341 score |
| 9 | 3gaf | - | https://baadalsg.inflibnet.ac.in/jspui/bitstream/10603/196179/12/12_chapter%204.... | Sequence and structural studies of proteins associated with cell wall biosynthesis lipolysis and isoniazid drug resistance in Mycobacterium tuberculosis | 2018 | S Anishetty - 2018 - baadalsg.inflibnet.ac.in | Page 4. 63 of recognizing the native structure out of decoy structures 3D coordinates of Isoniazid-NAD adduct ( PDB : 2IDZ) and Triclosan ( PDB : 3OID) was obtained from PDB Rv0547c Oxidoreductase 5e-35 20% FX6-K - Rv0927c Oxidoreductase 1e-32 23% FX6-K 3GAF 41.32 |
| 10 | 3gaf | - | http://insubriaspace.cineca.it/handle/10277/445 | New microbial hydroxysteroid dehydrogenases and their synthetic application for the selective modification of bile acids. | 2011 | EE Ferrandi - 2011 - insubriaspace.cineca.it | ... but it has been hypothesized that binding of bile acids to hydrophobic pocket(s) of the proteasesmay destabilize their structure, making additional ... Bile salts are used for the structural rigidity ofthe steroid skeleton, which allows the formation of stable cavities, and because both ... |