We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9DB0 | 2025 | 0 |
| 9DB1 | 2025 | 0 |
| 9DBE | 2025 | 0 |
| 9DCN | 2024 | 0 |
| 9DEZ | 2024 | 0 |
| 9DF0 | 2025 | 0 |
| 9DGO | 2025 | 0 |
| 9DND | 2025 | 0 |
| 9DNE | 2025 | 0 |
| 9DQM | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tmg | - | http://www.mdpi.com/2073-4352/3/2/306 | Glycine Betaine Recognition through Cation-PI Interactions in Crystal Structures of Glycine Betaine Complexes with C-Ethyl-pyrogallol [4] arene and C-Ethyl-resorcin [4]arene as Receptors | 2013 | I Fujisawa, K Aoki - Crystals, 2013 - mdpi.com | ... 18. Gardberg, A.; Fox, D.; Staker, B.; Stewart, L. Crystal Structure Of Glycine Betaine, L-Proline ABC Transporter, Glycine/Betaine/L-Proline-Binding Protein (ProX) from Borrelia Burgdorferi;PDB (Protein Data Bank): Upton, NY, USA, 2013; No. 3TMG. 19. ... |
| 2 | 3hhe | - | http://jb.asm.org/content/195/9/2101.short | A genomic signature and the identification of new sporulation genes | 2013 | AB Abecasis, M Serrano, R Alves, L Quintais… - Journal of Bacteriology, 2013 - Am Soc Microbiol | Supplemental Material: B: structure based alignment between the YlzA protein and a putative ribose-5-phosphate isomerase from Bartonella henselae (pdb code 3HHE). Note that that the first 20 residues of YlzA do not align with the B. henselae protein. |
| 3 | 3qdf | 3r6o, 3rr6 | http://www.biochemj.org/bj/449/bj4490051.htm | Crystal structures of Cg1458 reveal a catalytic lid domain and a common catalytic mechanism for the FAH family | 2013 | R Tingting, G Yanyan, M May, Z Wenjun? - Biochemical Journal, 2013 - biochemj.org | ... Source/description, PDB ID, Resolution (?), Sequence identity (%), Aligned residues, Backbone RMSD (?). C. glutamicum/Cg1458, 4DBF, 1.90, ?, ?, ?. 4DBH, 2.00, ?, ?, ?. Mycobacterium marinum M/MMAR-1718, 3QDF, 2.05, 56.73, 245, 1.11. ... |
| 4 | 4fry | - | http://www.sciencedirect.com/science/article/pii/S0003986113003202 | CBS domains: Ligand binding sites and conformational variability | 2013 | J Ere?o-Orbea, I Oyenarte, LA Mart?nez-Cruz - Archives of biochemistry and biophysics, 2013 - Elsevier | ... At present 120 crystal structures containing 52 different ligands have been reported in the protein data bank (PDB). Of these, 56 entries correspond to eukaryal, 47 to bacterial and 17 to archaeal proteins, respectively. Among ... |
| 5 | 3ue9 | - | http://scripts.iucr.org/cgi-bin/paper?S1744309113021921 | Purification, crystallization and preliminary X-ray analysis of adenylosuccinate synthetase from the fungal pathogen Cryptococcus neoformans | 2013 | RD Blundell, SJ Williams, CA Morrow? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... Zhou, S. Peterson, W. Anderson & A. Joachimiak, unpublished work), Campylobacter jejuni (43% identity; PDB entry 3r7t ; Center for Structural Genomics of Infectious Diseases, unpublished work) and Burkholderia thailandensis (40% identity; PDB entry 3ue9 ; Seattle Structural ... |
| 6 | 3obk | - | http://www.ingentaconnect.com/content/ben/ctmc/2013/00000013/00000001/art00006 | Impact of quaternary structure dynamics on allosteric drug discovery | 2013 | EK Jaffe - Current topics in medicinal chemistry, 2013 - ingentaconnect.com | ... Toxoplasma gondii PBGS (PDB id 3OBK, shown left) contains a 13 amino acid C-terminal exten- sion that forms a domain swapped beta sheet (orange/yellow), which locks the dimer into the pro-octamer conformation. Pseudomonas ... |
| 7 | 3r1j | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765361/ | Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily | 2013 | R Uberto, EW Moomaw - PLoS One, 2013 - journals.plos.org | File S1 Combined Supporting Information Files - Alpha-ketoglutarate-dependent taurine dioxygenase Mycobacterium avium 3r1j |
| 8 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24238/full | Identification of a novel ligand binding site in phosphoserine phosphatase from the hyperthermophilic archaeon Thermococcus onnurineus | 2013 | TY Jung, YS Kim, BH Oh, E Woo - Proteins: Structure, Function, and Bioinformatics, 2013 - Wiley Online Library | ... Flexible movement between the open structure (PDB ID: 1L8L, 1RKV, 2FEA, and 3M1Y), colored in bright orange, and closed structures (PDB ID: 1F5S, 1L7M, 1J97, 1L7P, 3P96, and 3KD3), colored in bluewhite, were analyzed by the program DynDom. ... |
| 9 | 3lls | - | http://www.biochemj.org/bj/450/bj4500127.htm | Crystal structure of hexanoyl-CoA bound to beta-ketoacyl reductase FabG4 of Mycobacterium tuberculosis | 2013 | D Debajyoti, B Sudipta, R Amlan, B Rupam? - Biochemical Journal, 2013 - biochemj.org | ... The structure of the FabG4?NADH complex was determined by molecular replacement in MOLREP [21] using a monomer of the apoFabG4 structure (PDB code 3LLS). ... MtFabG1 (MabA;PDB code 1UZM) and FabG4 (PDB codes 3LLS and 3Q6I) were chosen as the receptor. ... |
| 10 | 3mc4 | - | http://www.sciencedirect.com/science/article/pii/S0959440X13000407 | The cysteine regulatory complex from plants and microbes: what was old is new again | 2013 | JM Jez, S Dey - Current opinion in structural biology, 2013 - Elsevier | ... To date, both hexameric and trimeric SAT have been described in the literature [ 12?, 13, 14 and 15 ] and as unpublished structures (PDB: 3GVD, 3MC4, 3F1X). The hexameric SAT are a dimer of trimers associated through a head-to-head orientation of the N-terminal domains. ... |