We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3v7o | 5dvw | http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005937 | The Ebola virus VP30-NP interaction Is a regulator of viral RNA synthesis | 2016 | RN Kirchdoerfer, CL Moyer, DM Abelson - PLoS , 2016 - journals.plos.org | ... the interactions of Ebola, Sudan and Marburg virus VP30 with NP using in vitro biochemistry,structural biology and cell ... here, we further compared our structures to the Reston ebolavirus(RESTV) VP30 CTD (3V7O.pdb [12]) and a more recently determined structure of the ... |
| 2 | 3tmg | - | https://www.frontiersin.org/articles/10.3389/fmicb.2018.02536/abstract | The GbsR family of transcriptional regulators: functional characterization of the OpuAR repressor | 2018 | E Bremer, S Ronzheimer, B Warmbold- Frontiers in, 2018 - frontiersin.org | the linker region, an aromatic cage is predicted as the inducer-binding site, whose envisioned architecture resembles that subtilis GbsR protein (Nau-Wagner et al., 2012); it is based on the crystal structure of the DNA-binding protein Mj223 of M. jannaschii ( PDB entry 1KU9 |
| 3 | 4qhq | - | http://www.nature.com/nmeth/journal/v12/n1/full/nmeth.3213.html | The I-TASSER Suite: protein structure and function prediction | 2015 | J Yang, R Yan, A Roy, D Xu, J Poisson, Y Zhang - Nature methods, 2015 - nature.com | ... binding protein from Burkholderia cenocepacia bound to methionine (CAMEO: C0081; PDB:4qhqA) (e ... bound to calcium ion and thymidine-3′,5′-diphosphate (CAMEO: C0046; PDB:4qf4A ... on the significance of threading alignments and the density of structure clustering; the ... |
| 4 | 3n5o | - | http://proteinsf.jbc.org/highwire/filestream/2190/field_highwire_a_download_vars... | The Impact of Nitric Oxide Toxicity on the | 2013 | G Ricci, MWP Federici, PG Board, D Bovi, ML Bello… - 2013 - ASBMB | ... The structural and electrostatic properties of Cys-based GSTs and Ser-based GSTs provide theexplanation for their lower affinity for DNDGIC. ... The comparison between the only availablecrystallographic structure of a DNGIC-GST complex (human GSTP1-1, PDB id: 1ZGN ... |
| 5 | 3p96 | - | http://link.springer.com/article/10.1007/s00018-016-2177-2 | The M. tuberculosis HAD phosphatase (Rv3042c) interacts with host proteins and is inhibited by Clofazimine | 2016 | S Shree, AK Singh, R Saxena, H Kumar - Cellular and Molecular , 2016 - Springer | ... SanyalAffiliated withBiochemistry Division, CSIR-Central Drug Research Institute; and 1 more: ,Ravishankar RamachandranAffiliated withMolecular and Structural Biology Division ... Homologymodels of MtSerB2 based on M. avium SerB (PDB code 3P96) were generated ... |
| 6 | 3mmt | - | https://chemrxiv.org/ndownloader/files/24733793 | The Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis | 2020 | M Sharma, P Abayakoon, Y Jin, R Epa, JP Lingford - 2020 - chemrxiv.org | Figure S15. Closed conformations of PfkB, TPK and SF kinases indicate close structural rela- tionship EcYihVADPMgSF structure reveals KRN sulfonate recognition triad in YihV A, FBPA from Bartonella henselae forms homotetramers ( 3MMT . pdb ),{, 2011 #8494} FBPA from |
| 7 | 5bq2 | - | https://www.sciencedirect.com/science/article/pii/S0223523421004177 | The Mur Enzymes Chink in the Armour of Mycobacterium tuberculosis Cell Wall | 2021 | Y Shinde, I Ahmad, S Surana, H Patel- European Journal of Medicinal, 2021 - Elsevier | Mtb Mur ligases with the same catalytic mechanism share conserved amino acid regions and structural features that can conceivably exploit for the designing of the inhibitors, which can simultaneously target more than one isoforms (MurC-MurF) of the enzyme ... According to sequence homol- ogy search using BLASTp against PBD, 06 proteins structure tem- plates (PDB ID 3SG1, 5BQ2, 3ISS, 1A2N, 1UAE, and 3R38) were picked based on sequence identity and more statistical significance, |
| 8 | 3gbz | - | http://www.sciencedirect.com/science/article/pii/S0022283613004518 | The N-terminal extension of UBE2E ubiquitin conjugating enzymes limits chain assembly | 2013 | FR Schumacher, G Wilson, CL Day - Journal of molecular biology, 2013 - Elsevier | ... (a) Overlay of the core domain of UBE2E1 (3GBZ) onto the structure of UBE2D2~Ub conjugate (PDB: 3A33). The interaction between ubiquitin from one molecule, shown as a ribbon (teal) and a surface, and the backside of UBE2D2 (teal ribbon) is shown. ... |
| 9 | 3vab | - | https://www.biorxiv.org/content/10.1101/2020.10.01.322594v1.full-text | The Phaeodactylum tricornutum Diaminopimelate Decarboxylase was Acquired via Horizontal Gene Transfer from Bacteria and Displays Substrate | 2020 | VA Bielinski, JK Brunson, A Ghosh, MA Moosburner- bioRxiv, 2020 - biorxiv.org | in the active site. The structure underscores features unique to the PtLYSA clan of DAPDC and provides structural insight into the determinants responsible for the substrate-promiscuity observed in PtLYSA. ... Akin to protomer 2 of PtLYSA, this segment is not included in the structures of DAPDC from Aquifex aeolicus (PDB 2P3E) and Brucella melitensis (PDB 3VAB). |
| 10 | 4f36 | 4fky, 4f4a, 4fkx, 4p8r | http://www.mdpi.com/1420-3049/21/10/1389/htm | The Potential of Secondary Metabolites from Plants as Drugs or Leads against Protozoan Neglected DiseasesPart III: In-Silico Molecular Docking | 2016 | IV Ogungbe, WN Setzer - Molecules, 2016 - mdpi.com | ... accessibilities: (1) in most cases the protein is modeled as a rigid structure without flexibility;(2 ... compounds that may themselves function as efficacious drugs, may serve as lead structuresfor chemical modification and optimization, or provide structural templates for de ... |