We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9DB0 | 2025 | 0 |
| 9DB1 | 2025 | 0 |
| 9DBE | 2025 | 0 |
| 9DCN | 2024 | 0 |
| 9DEZ | 2024 | 0 |
| 9DF0 | 2025 | 0 |
| 9DGO | 2025 | 0 |
| 9DND | 2025 | 0 |
| 9DNE | 2025 | 0 |
| 9DQM | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6xdh | - | https://www.biorxiv.org/content/10.1101/2021.06.02.446845v1.abstract | 3D-Scaffold: Deep Learning Framework to Generate 3D Coordinates of Drug-like Molecules with Desired Scaffolds. | 2021 | RP Joshi, N Gebauer, N Kumar, M Bontha- bioRxiv, 2021 - biorxiv.org | generates 3D coordinates of the molecules with a given core structure ; (II) It works equally 3 reasonable molecules even with small training datasets due to the robust architecture of the (Mpro) and a SARS-CoV-2 non- structural protein endoribonuclease (NSP15). ... As a test case example, we generated non-covalent inhibitors for the SAR-CoV-2 non-structural protein endoribonuclease (NSP15) target (PDB ID: 6XDH) by optimizing Exebryl-1 based compounds |
| 2 | 6wps | - | https://academic.oup.com/glycob/advance-article-abstract/doi/10.1093/glycob/cwab... | Modernized uniform representation of carbohydrate molecules in the Protein Data Bank | 2021 | C Shao, Z Feng, JD Westbrook, E Peisach- , 2021 - academic.oup.com | glycan structures (eg, SARS-CoV-2 protein-carbohydrate complex PDB ID 6WPS ) and the partnership is committed to maintaining consistency and accuracy across the PDB archive by regularly reviewing data processing procedures and carrying out structure remediation efforts |
| 3 | 5vcu | - | https://arxiv.org/abs/2102.03202 | Interpretable Neural Networks based classifiers for categorical inputs | 2021 | S Zamuner, PDL Rios- arXiv preprint arXiv:2102.03202, 2021 - arxiv.org | cartoon representation of RAS protein (green) bounded to GDP (light blue spheres) from pdb 5vcu belonging to the most relevant predicted triplets are clustered in the structure of the Note that, to better compare to plmDCA, the same architecture and hyperparameters have |
| 4 | 4f4h | 6mg6, 5kha | https://www.mdpi.com/1095248 | Crystal Structure of Nitrilase-Like Protein Nit2 from Kluyveromyces lactis | 2021 | C Jin, H Jin, BC Jeong, DH Cho, HS Chun, WK Kim- Crystals, 2021 - mdpi.com | On Novel Copper Based Alloys Development via Friction Stir Alloying... The corresponding C-terminal region is shown in red. The six homologous structures indicate the following: BtGlu-dep_NAD+ synthetase: glutamine dependent NAD+ synthetase from Burkholderia thailandensis (PDB code, 4F4H). .. The two homologous structures indicate the following: HpCN hydrolase: CN hydrolase from Helicobacter pylori (PDB code, 6MG6) |
| 5 | 6brl | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jimd.12387 | Metabolic impact of pathogenic variants in the mitochondrial glutamyltRNA synthetase EARS2 | 2021 | M Ni, LF Black, C Pan, H Vu, J Pei, B Ko- Journal of Inherited, 2021 - Wiley Online Library | 3A and B). Structural modeling of human EARS2 was obtained from the SWISS-MODEL Page 10. repository (Bienert et al 2017) based on the crystal structure of the glutamyl-tRNA synthetase from Elizabethkingia meningosepticum ( PDB : 6brl ), and superimposed on the crystal |
| 6 | 5i1f | - | https://www.jbc.org/article/S0021-9258(21)00156-3/abstract | Bacillus subtilis YngB contributes to wall teichoic acid glucosylation and glycolipid formation during anaerobic growth | 2021 | CH Wu, J Rismondo, RML Morgan, Y Shen- Journal of Biological, 2021 - ASBMB | Section of Structural and Synthetic Biology, Department of Infectious Disease, Imperial College London, London, United Kingdom The crystal structure of YngB revealed that the protein has the typical fold and all necessary active site features of a functional UGPase |
| 7 | 3u0d | - | https://www.sciencedirect.com/science/article/pii/S1093326321000309 | Acute phase 1-acid glycoprotein as a siderophore-capturing component of the human plasma: A molecular modeling study | 2021 | SA Samsonov, F Zsila, M Maszota-Zieleniak- Journal of Molecular, 2021 - Elsevier | JavaScript is disabled on your browser. Please enable JavaScript to use all the features on this page. Skip to main content Skip to article |
| 8 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.02.17.431625v1.abstract | A rigorous framework for detecting SARS-CoV-2 spike protein mutational ensemble from genomic and structural features | 2021 | S Fatihi, S Rathore, A Pathak, D Gahlot, M Mukerji- bioRxiv, 2021 - biorxiv.org | Cryo-EM structures of the D614G spike structure have revealed that the mutant D614 is stable with RBD in an up mational states of the spike were analysed (see Methods for PDB ids) spike conformers showed large structural changes, with an average deviation of 2.77 0.42 ... 18 cryo-EM structures for closed spike conformation (PDB ID: 6ZGE, 6VXX, 6X2C, 6X6P, 6X29, 6X79, 6XF5, 6XLU, 6XM5, 6ZB4, 6ZB5, 6ZGI, 6ZP0, 7CAB, 7DDD, 7DF3, 7JJI and 7JWY) were taken from RCSB P |
| 9 | 4ziy | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2021.1908913 | Identification of novel multitarget antitubercular inhibitors against mycobacterial peptidoglycan biosynthetic Mur enzymes by structure-based virtual screening | 2021 | M Kumari, N Subbarao- Journal of Biomolecular Structure and, 2021 - Taylor & Francis | extracted eight protein templates: 1GG4, 2AM1, 3ZM5, 4CVK, 4QDI, 4QDI, 4QF5 and 4ZIY , which identity best model with the low RMS value of superposition using Swiss- pdb viewer (Guex The modeled 3D structure of Mur enzymes showed close similarity to 3D crystal protein |
| 10 | 5dvw | - | https://www.intechopen.com/online-first/docking-based-screening-of-cell-penetrat... | Docking-Based Screening of Cell-Penetrating Peptides with Antiviral Features and Ebola Virus Proteins as a Drug Discovery Approach to Develop a | 2021 | E Raoufi, B Bahramimeimandi- Viral, 2021 - intechopen.com | The potential reservoirs of EBOV RNA are three species of African fruit bats [3]. The genome of this virus contains a negative-strand RNA that encodes six structural and one non- structural proteins, which can be employed as potential drug targets, including transmembrane ... The structures of GP (PDBID: 5JQB), VP35 (PDBID: 3FKE), VP24 (PDBID: 4M0Q), VP30 (PDBID: 5DVW), VP40 (PDBID: 4LDB) and NP (PDBID: 4Z9P) proteins of EBOV were collected from Protein Data Bank |