We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 2KHR | 2009 | 5 |
| 2KHP | 2009 | 9 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3dmp | 3qbp, 3e5b, 3hm0 | https://www.sciencedirect.com/science/article/pii/S1570963920301515 | Tetramer protein complex interface residue pairs prediction with LSTM combined with graph representations | 2020 | D Sun, X Gong- Biochimica et Biophysica Acta (BBA)-Proteins and, 2020 - Elsevier | The structure diagram of LSTM neural network is shown in Fig. 3. (See Fig. 1, Fig Table 1. Dataset. DataSet, PDB ID 2H8N, 2JBR, 2NQO, 2Y32, 3DFQ, 3ESI, 3G7K, 3HM0, 3OHP, 3RD4, 3 V15, 1IZ1, 1JL2. 1KAM, 1NSW, 2GJD, 2R90, 2ZYZ, 3CDK, 3CO2, 3DMP , 3F6Z, 1BV4, 1YIF |
| 2 | 3dmp | - | https://arxiv.org/abs/2111.07786 | Independent SE (3)-Equivariant Models for End-to-End Rigid Protein Docking | 2021 | OE Ganea, X Huang, C Bunne, Y Bian- arXiv preprint arXiv, 2021 - arxiv.org | the 3D structure of a protein-protein complex from the individual unbound structures , of the initial locations and orientations of the two structures . Our model, named EQUIDOCK, |
| 3 | 3dmp | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/cctc.201701223 | Enzymatic Production of NonNatural Nucleoside5Monophosphates by a Thermostable Uracil Phosphoribosyltransferase | 2018 | J del Arco, J Acosta, HM Pereira, A Perona- , 2018 - Wiley Online Library | Overall structure and architecture of active site. We have determined the crystal structure of TtUPRT ( PDB 1v9s) at 2.1 resolution (Table 1). The 1o5), UPRT from Escherichia coli (EcUPRT; PDB 2ehj), UPRT from Burkholderia pseudomallei (BpUPRT; PDB 3dmp ), UPRT from |
| 4 | 3dmo | 3mpz | http://www.sciencedirect.com/science/article/pii/S0003986111000464 | Crystal structure determination and dynamic studies of< i> Mycobacterium tuberculosis</i> Cytidine deaminase in complex with products | 2011 | ZA S?nchez-Quitian, LFSM Timmers? - Archives of Biochemistry and Biophysics, 2011 - Elsevier | ... Furthermore, in order to verify if these conformations are in agreement with CDA of different organism previously published, we analyzed other 13 CDA structures (PDB access codes: 3IJF, 3MPZ, 1MQ0, 3DMO, 1UX1, 2D30, 1UX0, 1UWZ, 1JTK, 2FR5, 1ZAB, 2FR6, and 3B8F) ... |
| 5 | 3dmo | 3mpz | http://meriva.pucrs.br/dspace/handle/10923/5732 | Análise bioquímica, estrutural e funcional da enzima citidina deaminase (EC 3.5. 4.5) de Mycobacterium tuberculosis H37Rv | 2014 | ZAS Quitian - 2014 - meriva.pucrs.br | ... This work presents the crystal structures of MtCDA in complex with uridine (2.4 Å resolution) and ...process, showing that structural flexibility of some residues are important to product binding. ... MtCDAstructure. The role of the conserved glutamate-47 (E47) residue was ... |
| 6 | 3dmo | - | http://permalink.lanl.gov/object/tr?what=info:lanl-repo/lareport/LA-UR-11-04078 | Achievements of structural genomics | 2011 | TC Terwilliger - 2011 - permalink.lanl.gov | ... Semi-automated Structure determination ~ ... PDB 3BV6, 2275 AA Metallo protein - ... l University ofIowa 2 University of Michigan Medical School Crystal structures of the FDTS-FAD- 3The JointCenter for Structural Genomics at GNF 4SSRL, Stanford University dUMP complex. ... |
| 7 | 3dmo | - | http://www.sciencedirect.com/science/article/pii/S1047847709003463 | Structural and functional analyses of< i> Mycobacterium tuberculosis Rv3315c</i>-encoded metal-dependent homotetrameric cytidine deaminase | 2010 | ZA S?nchez-Quitian, CZ Schneider, RG Ducati? - Journal of structural Biology, 2010 - Elsevier | ... in the PDB (3IJF). Fig. 7A and B show two views of the canonical homotetrameric structure observed for CDAs from S. cerevisiae (1R5T), B. subtilis (1UX1, 1UWZ, 1UX0, 1JTK), Mus musculus (1ZAB, 2FR5, 2FR6), Bacillus anthracis (2D30), Burkholderia pseudomallei (3DMO), ... |
| 8 | 3dmo | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2863/full | Crystal structures of MBP fusion proteins | 2015 | DS Waugh - Protein Science, 2015 - Wiley Online Library | ... 65 Nineteen of the MBP fusion protein structures deposited in the PDB include surface ... Table 2. Surface Entropy Reduction Mutations in MBP and Their Participation in Crystal Contacts 3DMO D83A/K84A ... |
| 9 | 3dmo | 3mc4, 3laa, 3gir, 3qk8, 3l3b, 3kre, 3oc7, 3ixc, 3kzx, 3eiz, 3o0h, 3mqw, 3md7, 3pzy, 3o0k, 3fq3, 3mxu, 3mdx, 3js5, 3gp3, 3qhx, 3o0m, 3js4, 3o38, 3mqd, 3qlj, 3qd5, 3nrr, 3ndo, 3qbp, 3ol3, 3r6f, 3p32, 3lv0, 3njd, 3mpz, 3lqw, 3gwa, 3quv, 3dms, 3kzu, 3p2y, 3nfw, 3lnc, 3eg4, 3gbz, 3k31, 3fs2, 3qh4, 3oc9, 3ipw, 3pgx, 3oa3, 3h81, 3h7f, 3enk, 3ld3, 3k9w, 3oj7, 3lr4, 3oj6, 3gwc, 3i3f, 3ek2, 3oks, 3ngj, 3pk0, 3n5o, 3moy, 3qxz, 3cxk, 3ngf, 3ndn, 3e7d, 3ii9, 3meb, 3oec, 3nwo, 3qat, 3pe8, 3k2c, 3fvb, 3lb5, 3r1i, 3p0t, 3krs, 3hgb, 3f0d, 3ecd, 3mx6, 3gvg, 3p4t, 3myb, 3kxq, 3krb | http://search.proquest.com/openview/6d1f24bc5507d574e710805358571132/1?pq-origsi... | Rare Sidechain Conformations in Proteins and DNA | 2015 | BJ Hintze - 2015 - search.proquest.com | ... Ponder and Richards in 1987 (Ponder and Richards, 1987), and they are important. tools in structural biology (Dunbrack, 2002). ... the Protein Data Bank ( PDB ) (Berman, 2000). ... 2010; Winn et al., 2011), protein structure prediction and design (Bower et al., 1997; ... |
| 10 | 3dah | - | https://bmcstructbiol.biomedcentral.com/articles/10.1186/s12900-019-0100-4 | Crystal structure of E. coli PRPP synthetase | 2019 | W Zhou, A Tsai, DA Dattmore- Structural, 2019 - bmcstructbiol.biomedcentral.com | Overall, this study details key structural features of an enzyme that catalyzes a critical step in nucleotide metabolism The structure was solved by molecular replacement using the PRPP synthetase from Burkholderia pseudomallei ( PDB 3DAH ) as the search model [14] |