We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9E9A | 2024 | 0 |
| 9EA0 | 2025 | 0 |
| 9EH8 | 2025 | 0 |
| 9MDE | 2025 | 0 |
| 9MDF | 2025 | 0 |
| 9MDH | 2025 | 0 |
| 9MDT | 2024 | 0 |
| 9MEA | 2024 | 0 |
| 9MEC | 2024 | 0 |
| 9MED | 2024 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3r20 | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3732440/ | Insight from the structural molecular model of cytidylate kinase from Mycobacterium tuberculosis | 2013 | NK Verma, B Singh - Bioinformation, 2013 - ncbi.nlm.nih.gov | ... known structure (template) of Mycobacterium smegmatis (PDB ID: 3R20) was chosen from proteindatabank (PDB) by using ... experimental structure of cytidylate kinase of Mycobacterium tuberculosis is not yet available in PDB (Protein Data Bank), comparative modeling ... |
| 2 | 4f3p | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.12274/full | Molecular and structural basis of glutathione import in Gram-positive bacteria via GshT and the cystine ABC importer TcyBC of Streptococcus mutans | 2013 | B Vergauwen, K Verstraete? - Molecular Microbiology, 2013 - Wiley Online Library | ... binding protein HisJ of Salmonella enterica (Oh et al., 1994; Yao et al., 1994), D177 and R96 in the arginine-binding protein of Salmonella typhimurium (Stamp et al., 2011), and D180 and R98 in the glutamine-binding protein of Burkholderia pseudomallei (PDB code: 4F3P). ... |
| 3 | 3gka | - | http://www.sciencedirect.com/science/article/pii/S0301462213001397 | Structural studies of the< i> Trypanosoma cruzi</i> Old Yellow Enzyme: Insights into enzyme dynamics and specificity | 2013 | MT Murakami, NC Rodrigues, LM Gava? - Biophysical Chemistry, 2013 - Elsevier | ... of the TcOYE structure in P2 1 2 1 2 1 and P2 1 crystalline forms have been deposited in the Protein Data Bank with the ... ? rmsd over 348 C? atoms - PDB code: 2GOU) and Burkholderia pseudomallei (BpOYE - 1.24 ? rmsd over 341 C? atoms - PDB code: 3GKA) revealed a ... |
| 4 | 3uqb | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2356/full | To fuse or not to fuse: What is your purpose? | 2013 | MR Bell, MJ Engleka, A Malik, JE Strickler - Protein Science, 2013 - Wiley Online Library | ... The protein was crystallized and the structure determined to 1.9Å resolution with SUMO stillattached (labeled). (PDB ID 3UQB, Fox III, Abendroth, Staker, and Stewart, Seattle StructuralGenomics Center for Infectious Disease, deposited Nov. 2011). ... |
| 5 | 3khp | - | http://scripts.iucr.org/cgi-bin/paper?rl5046 | Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv | 2013 | R Biswas, D Dutta, AK Das - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... PDB entry, Identity (%), Query cover (%), Reference. 1pn2, 47, 10, Koski et al. (2004 [Koski, MK, Haapalainen, AM, Hiltunen, JK & Glumoff, T. (2004). ... F66, 272-274.] ). 3khp, 36, 19, Seattle Structural Genomics Center for Infectious Disease (unpublished work). 3oml, 33, 37, Haataja ... |
| 6 | 3q1t | - | http://www.biomedcentral.com/1471-2105/14/S3/S13/ | Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs) | 2013 | Z Wang, P Yin, JS Lee, R Parasuram? - BMC Bioinformatics, 2013 - biomedcentral.com | ... A structural genomics protein from Mycobacterium avium (PDB ID 3q1t) has been reported to be an enoyl-CoA hydratase (ECH), but SALSA ... There are currently over 11,000 structural genomics (SG) protein structures in the Protein Data Bank (PDB) [1] and most of them are of ... |
| 7 | 3sdo | - | http://www.sciencedirect.com/science/article/pii/S157096391300037X | Halogen bonding at the ATP binding site of protein kinases: Preferred geometry and topology of ligand binding | 2013 | J Pozna?ski, D Shugar - Biochimica et Biophysica Acta (BBA)-Proteins and ?, 2013 - Elsevier | ... bonding mode occurs to the p-loop region (Arg43-Phe54 in CK2?) in 1 J91, 1ZLT, 2GU8, 2UW8, 2X6D 3NGA 3SDO, frequently accompanying ... Thus, the side-chain carboxyl of Asp (PDB IDs: 1ZOH, 3KXG, 1Q4L, 1FVT, 1UV5, 3ZZ2), a backbone carbonyl of Gly (PDB IDs: 2XP2 ... |
| 8 | 3gbz | - | http://www.sciencedirect.com/science/article/pii/S0022283613004518 | The N-terminal extension of UBE2E ubiquitin conjugating enzymes limits chain assembly | 2013 | FR Schumacher, G Wilson, CL Day - Journal of molecular biology, 2013 - Elsevier | ... (a) Overlay of the core domain of UBE2E1 (3GBZ) onto the structure of UBE2D2~Ub conjugate (PDB: 3A33). The interaction between ubiquitin from one molecule, shown as a ribbon (teal) and a surface, and the backside of UBE2D2 (teal ribbon) is shown. ... |
| 9 | 3p0x | - | http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=6636315 | Predicting Protein-Ligand Binding Sites using Support Vector Machine with Protein Properties | 2013 | G Wong, F Leung, S Ling - 2013 - ieeexplore.ieee.org | ... The structure of proteins with bound ligands are obtained from the Protein Data Bank (PDB) [8], which ... First, the real binding sites are defined from PDB and each site is represented by a grid point in the center of it. ... They are 2cwh, 1g6c, 3p0x, 1wxg, 3kco, and 1k54. ... |
| 10 | 2kok | - | http://link.springer.com/article/10.1007/s10142-012-0296-x | A new arsenate reductase involved in arsenic detoxification in Anabaena sp. PCC7120 | 2013 | S Pandey, AK Shrivastava, VK Singh, R Rai… - Functional & integrative …, 2013 - Springer | ... b Structure-based multiple sequence alignment of All0195 homologs. ... 261278552 |