We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2kwl | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07845.x/full | The coenzyme A disulphide reductase of Borrelia burgdorferi is important for rapid growth throughout the enzootic cycle and essential for infection of the mammalian host | 2011 | CH Eggers, MJ Caimano, RA Malizia? - Molecular Microbiology, 2011 - Wiley Online Library | ... The orientation is the same as Fig. 3 published in (Wallen et al., 2008). PDB code for the BaCoADR structure used is 3CGD. B. The predicted active site of BbCoADR. BbCoADR residues [Cys 42 (chain A) and Tyr366' and Tyr424' (chain B)] are indicated. ... |
| 2 | 4qhq | - | http://www.degruyter.com/dg/justaccepted.articlelist.resultlinks.fullcontentlink... | The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex. | 2015 | PT Nguyen, QW Li, NS Kadaba, JY Lai, JG Yang… - Biological …, 2015 - degruyter.com | ... structures with PDB entries 3TQW, 3UP9, 4EF1, 4GOT, 4IB2, 4K3F, 4QHQ, 4QYM, and 4Q5T. ...2008) that was in turn solved by molecular replacement from PDB entry 1P99 (Williams et al.,2004), a Gly-Met-binding protein. ... Coordinates and structure factors have been ... |
| 3 | 4ywj | 5bnt, 6bac, 6amy, 5ha4, 6amz, 7skb | https://www.sciencedirect.com/science/article/pii/S0304416523000181 | The coordinated action of the enzymes in the L-lysine biosynthetic pathway and how to inhibit it for antibiotic targets | 2023 | S Muduli, S Karmakar, S Mishra- Biochimica et Biophysica Acta (BBA), 2023 - Elsevier | (a) The trimeric structure of the CgDapD enzyme ( PDB ID: 5E3P). Two monomers are shown in (b) The crystal structure of the CgDapD enzyme in monomeric form ( PDB ID: 5E3Q), |
| 4 | 3u5w | - | https://www.sciencedirect.com/science/article/pii/S1047847719300516 | The crystal structure of Rv2991 from Mycobacterium tuberculosis: An F420 binding protein with unknown function | 2019 | S Benini, A Haouz, F Proux, P Alzari- Journal of structural biology, 2019 - Elsevier | from M. tuberculosis in complex with F 420 (Ahmed et al., 2016); 3U5W uncharacterized protein of secondary structural elements of the query (Rv2991) that match the target structure by the sequence similarity search by BLASTp when Rv2991was compared to the whole PDB |
| 5 | 3kw3 | - | http://www.biomedcentral.com/1471-2180/11/116 | The crystal structure of alanine racemase from Streptococcus pneumoniae, a target for structure-based drug design | 2011 | H Im, ML Sharpe, U Strych, M Davlieva? - BMC Microbiology, 2011 - biomedcentral.com | ... of this enzyme from a further six microorganisms have been deposited in the PDB: Bartonella henselae (PDB ID 3KW3), Oenococcus oeni ... are listed in Table 1. Structure factors and final atomic coordinates for AlrSP have been deposited in the Protein Databank (PDB ID: 3S46). ... |
| 6 | 3nwo | - | http://www.sciencedirect.com/science/article/pii/S0014579314001033 | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates | 2014 | Y Shinohara, A Miyanaga, F Kudo, T Eguchi - FEBS letters, 2014 - Elsevier | ... method using the Molrep program [16], with the crystal structure of the putative proline iminopeptidase Mycobacterium smegmatis (PDB code: 3NWO) being used ... The resulting coordinates and structure factors have been deposited in the Protein Data Bank (PDB code: 3WMR) ... |
| 7 | 3r8c | 3r20, 4die | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0233689 | The crystal structures of Thermus thermophilus CMP kinase complexed with a phosphoryl group acceptor and donor | 2020 | R Mega, N Nakagawa, S Kuramitsu, R Masui- PloS one, 2020 - journals.plos.org | open form, CMP-bound closed form, ADP-CDP-Gd 3+ -, and CDP-bound forms at resolutions of 1.7, 2.2, 1.5, 1.6, and 1.7 , respectively (Table 1, Fig 1). Structural differences between (B) Superimposition of the overall structure of ligand-free form (gray; PDB code 3W90 ... and ligand-free form of CMPK from M. abscessus (dark gray; 3R8C). These structures were structurally aligned ... The ligand-free form of M. smegmatis CMPK (PDB code 3R20) is almost the same structure as M. abscessus CMPK. |
| 8 | 3mc4 | - | http://www.sciencedirect.com/science/article/pii/S0959440X13000407 | The cysteine regulatory complex from plants and microbes: what was old is new again | 2013 | JM Jez, S Dey - Current opinion in structural biology, 2013 - Elsevier | ... To date, both hexameric and trimeric SAT have been described in the literature [ 12?, 13, 14 and 15 ] and as unpublished structures (PDB: 3GVD, 3MC4, 3F1X). The hexameric SAT are a dimer of trimers associated through a head-to-head orientation of the N-terminal domains. ... |
| 9 | 3uam | - | https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-017-2429-8 | The discovery of novel LPMO families with a new Hidden Markov model | 2017 | GP Voshol, E Vijgenboom - BMC Research , 2017 - bmcresnotes.biomedcentral.com | ... Q3JY22. 3UAM. nd. nd. AA10 (formerly CBM33). ... The structure of one of the AA10 LPMOs fromStreptomyces coelicolor A3(2) (PDB ID: 4OY7) [39], with the copper atom shown as a sphereand highly conserved residues labeled and shown as sticks. Genome mining for LPMOs. ... |
| 10 | 3r2v | 4z04 | https://corpus.ulaval.ca/entities/publication/d46f57f5-652b-43ca-816e-7b72b7404f... | The effect of changes in gene expression and gene duplication on reshaping protein fitness landscapes | 2025 | AFC Caballero - 2025 - corpus.ulaval.ca | The four levels of protein structure are depicted in order of increasing complexity: primary As described above, the PDB contains a large amount of protein structures . These structures |