We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8CTR | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CU9 | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5cy4 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1002/2211-5463.12720 | Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity | 2019 | Y Piotrowski, K Berg, DP Klebl, I Leiros- FEBS open, 2019 - Wiley Online Library | campestris, PDB 1J9A: Haemophilus influenzae, PDB 2IGI: E. coli, PDB 3TR8: Coxiella burnetii, PDB 5CY4 : Acinetobacter baumannii) In the X. campestris Orn structure ( PDB 2GBZ) it is shown that Orn forms a dimer in the crystal From the structural analysis it was shown that |
| 2 | 3js4 | - | http://escholarship.org/uc/item/2t44h65b.pdf | Highly Active Yeast MnSOD has a Novel Mechanism Involving Six-coordinate Mn (3+) Species | 2012 | Y Sheng - 2012 - escholarship.org | ... The enzyme structures of four classes of SOD. (A) Homo sapien CuZnSOD (pdb code: 1PU0); (B) Streptomyces coelicolor NiSOD (pdb code: 1T6U); (C) Saccharomyces cerevisiae MnSOD (pdb code: 3LSU); (D) Anaplasma phagocytophilum FeSOD (pdb code: 3JS4). Page 22. ... |
| 3 | 3js4 | - | http://pubs.acs.org/doi/abs/10.1021/cr4005296 | Superoxide dismutases and superoxide reductases | 2014 | Y Sheng, IA Abreu, DE Cabelli, MJ Maroney… - Chemical …, 2014 - ACS Publications | ... Figure 2. Stereo ribbon diagrams of SODs and SORs: (A) CuZnSOD (PDB code: 1PU0); (B) NiSOD (PDB code: 1T6U); (C) MnSOD (PDB code: 3LSU); (D) FeSOD (PDB code: 3JS4) ... |
| 4 | 6bfu | - | https://jvi.asm.org/content/early/2021/01/06/JVI.02284-20.abstract | Insight into vaccine development for Alpha-coronaviruses based on structural and immunological analyses of spike proteins | 2021 | Y Shi, J Shi, L Sun, Y Tan, G Wang, F Guo- Journal of, 2021 - Am Soc Microbiol | recognition pattern, especially the structure of the RBD and its state in the S-trimer, 112 Structural and immunological analyses of alpha- and beta-coronaviruses spike 124 proteins 125 To date, multiple S-trimer structures of coronaviruses have been resolved (12-14, 126 |
| 5 | 6bfu | - | https://journals.asm.org/doi/abs/10.1128/JVI.02284-20 | Insight into Vaccine Development for Alphacoronaviruses Based on Structural and Immunological Analyses of Spike Proteins | 2021 | Y Shi, J Shi, L Sun, Y Tan, G Wang, F Guo- Journal of, 2021 - Am Soc Microbiol | (B) Overall structure comparison of coronavirus S-trimers. The S-trimer structures of HCoV-229E ( PDB ID: 6U7H), HCoV-NL63 ( PDB ID: 5SZS), PEDV ( PDB ID: 6U7K), FIPV ( PDB ID: 6JX7), PDCoV ( PDB ID: 6BFU ), IBV ( PDB ID: 6CV0), SARS-CoV ( PDB ID: 5X5B), SARS |
| 6 | 5bq2 | - | https://www.sciencedirect.com/science/article/pii/S0223523421004177 | The Mur Enzymes Chink in the Armour of Mycobacterium tuberculosis Cell Wall | 2021 | Y Shinde, I Ahmad, S Surana, H Patel- European Journal of Medicinal, 2021 - Elsevier | Mtb Mur ligases with the same catalytic mechanism share conserved amino acid regions and structural features that can conceivably exploit for the designing of the inhibitors, which can simultaneously target more than one isoforms (MurC-MurF) of the enzyme ... According to sequence homol- ogy search using BLASTp against PBD, 06 proteins structure tem- plates (PDB ID 3SG1, 5BQ2, 3ISS, 1A2N, 1UAE, and 3R38) were picked based on sequence identity and more statistical significance, |
| 7 | 3nwo | - | http://www.sciencedirect.com/science/article/pii/S0014579314001033 | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates | 2014 | Y Shinohara, A Miyanaga, F Kudo, T Eguchi - FEBS letters, 2014 - Elsevier | ... method using the Molrep program [16], with the crystal structure of the putative proline iminopeptidase Mycobacterium smegmatis (PDB code: 3NWO) being used ... The resulting coordinates and structure factors have been deposited in the Protein Data Bank (PDB code: 3WMR) ... |
| 8 | 3lnc | - | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4631842 | Zno-S. Cerevisiae: An Effective Growth Promoter of Astragalus Memeranaceus and Nano-Antibacterial Agent Against Fusarium Oxysporum by Improving Trifolirhizin | 2023 | Y Su, W Yang, R Wang, H Zhang, J Meng- Available at SSRN - papers.ssrn.com | 3D crystal structures were imported into , PDB ID: 3o7q was selected for MFS transporter, guanylate kinase based 607 on PDB ID: 3lnc , sedoheptulose-bisphosphatase based on PDB |
| 9 | 4whx | 3u0g | https://www.sciencedirect.com/science/article/pii/S1570963919300494 | Functional characterization of PLP fold type IV transaminase with a mixed type of activity from Haliangium ochraceum | 2019 | YS Zeifman, KM Boyko, AY Nikolaeva- et Biophysica Acta (BBA, 2019 - Elsevier | These results complement our knowledge of the catalytic diversity of transaminases and indicate the need for further research to understand the structural basis of substrate specificity in these enzymes. Abbreviations PDB entry code, 6H65. 2.8. Structure solution and refinement |
| 10 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi500406h | Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cAMP and cGMP | 2014 | Y Tian, W Cui, M Huang, H Robinson, Y Wan - Biochemistry, 2014 - ACS Publications | ... structure. The atomic model was built with O(39) and refined with REFMAC.(40). The yPDE1 structure was compared with structures in the Protein Data Bank by the online program Dali (http://www.ebi.ac.uk/Tools/structure/dalilite). ... |