We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4j07 | - | http://informahealthcare.com/doi/abs/10.1517/17460441.2013.826188 | The eradication of leprosy: molecular modeling techniques for novel drug discovery | 2013 | S Anusuya, J Natarajan - Expert opinion on drug discovery, 2013 - informahealthcare.com | ... M. leprae (Table 1) were elucidated using X-ray diffraction methods and were deposited in ProteinData Bank (PDB). ... In case of the structure of riboflavin synthase (PDB ID: 4JO7), the resolution is 1.95 ? which ... Table 2. Results of Ramachandran plot analysis for 1BVS and 4J07. ... |
| 2 | 4dyw | 3hhj | http://onlinelibrary.wiley.com/doi/10.1002/prot.25223/full | The evolution of function within the Nudix homology clan | 2017 | JR Srouji, A Xu, A Park, JF Kirsch- Proteins: Structure,, 2017 - Wiley Online Library | ... Despite the structural similarity, sequence identity within the Nudix homology domain between these ... and X is any amino acid) constitutes a loop-helix-loop structure that is ... diphosphate isomerase family (represented by E. coli isopentenyl diphosphate isomerase PDB ID: 1NFS ... |
| 3 | 4g6c | - | https://www.nature.com/articles/s41467-022-33180-5 | The evolutionary advantage of an aromatic clamp in plant family 3 glycoside exo-hydrolases | 2022 | S Luang, X Fernndez-Luengo, A Nin-Hill- Nature, 2022 - nature.com | In this context, our aim was to provide direct structural evidence Based on these structures , we evaluate the reactant and that of Bacteroides -glucosidase ( PDB 5JP0) harbours the Glc ... while a β-hexosaminidase from Burkholderia cenocepacia10 folds into a single-domain (α/β)8 sandwich structure. |
| 4 | 3s99 | - | https://scripts.iucr.org/cgi-bin/paper?jb5014 | The evolving story of AtzT, a periplasmic binding protein | 2019 | ML Dennis, L Esquirol, T Nebl, J Newman- Section D: Structural, 2019 - scripts.iucr.org | (2019). D75, 9951002 Page 5. cluster protein and had electron density in the binding site for a purine. Post hoc analysis of the structure and sequence showed that PDB entry 3s99 has 54% sequence identity and an rmsd of 1.2A (over $330 residues) to AtzT |
| 5 | 4maq | - | http://www.biochemsoctrans.org/content/early/2018/02/26/BST20170518.abstract | The fumarylacetoacetate hydrolase (FAH) superfamily of enzymes: multifunctional enzymes from microbes to mitochondria | 2018 | AKH Weiss, JR Loeffler, KR Liedl- Biochemical Society, 2018 - biochemsoctrans.org | Skip to main content. Main menu. Home; About the Journal: Scope; Editorial Board; Benefits of Publishing; Impact & Metrics; Advertising/Sponsorship; About the Biochemical Society. Current Issue; For Authors: Submit Your Paper; Submission |
| 6 | 4k9d | - | https://www.sciencedirect.com/science/article/pii/S0141113618301211 | The glyceraldehyde-3-phosphate dehydrogenase of the shrimp Litopenaeus vannamei: Molecular cloning, characterization and expression during hypoxia | 2018 | L Camacho-Jimnez, AB Peregrino-Uriarte- Marine Environmental, 2018 - Elsevier | We also made a structural analysis in silico of the deduced protein from a comparative the GAPDH holoenzyme from P. versicolor solved by X-ray diffraction (2 ) ( PDB : 1SZJ, chain Finally, the LvGAPDH multimeric complex model was obtained from the former structure with the |
| 7 | 6axe | 4ex4 | https://aspace.repository.cam.ac.uk/handle/1810/298685 | The glyoxylate shunt as a target for antibacterial intervention in Pseudomonas aeruginosa | 2019 | AC McVey - 2019 - aspace.repository.cam.ac.uk | The structure of MSG from four prokaryotic species has been resolved by X-ray crystallography: E. coli... Mycobacterium marinum (PDB entry 6AXE), and Mycobacterium leprae (PDB entry 4EX4). Also, the E. coli MSG structure has been solved by NMR |
| 8 | 3qi6 | 3qhx | http://scripts.iucr.org/cgi-bin/paper?nw5049 | The hyperthermophilic cystathionine -synthase from the aerobic crenarchaeon Sulfolobus tokodaii: expression, purification, crystallization and structural insights | 2017 | D Sato, T Shiba, S Mizuno, A Kawamura - Section F: Structural , 2017 - scripts.iucr.org | ... E. Ahmed & S. Gourinath, unpublished work) and Mycobacterium ulcerans Agy99 (PDB entries 3qi6 and 3qhx ... of StCGS was solved by molecular replacement using E. coli CGS (PDB entry 1cs1 ...at basic pH and elevated temperature is caused by changes in the protein structure. ... |
| 9 | 7so9 | - | https://www.nature.com/articles/s42003-024-07350-8 | The identification of a SARs-CoV2 S2 protein derived peptide with super-antigen-like stimulatory properties on T-cells | 2025 | TH Tu, FE Bennani, N Masroori, C Liu- Communications, 2025 - nature.com | PDB IDs: 2XN9 62 and 4C56 63 were used, 2XN9 and 4C56 were attached with two crystal structures the complex HLA I-TCR, we used the PDB IDs 3PWP 64 . ... PDB IDs of the variants of SARS-CoV 2 used for homology modeling: Alpha_(B.1.1.7) (7R1A), Beta_(B.1.351) (7Q6E), Gamma_(P.1) (7V83), Delta_(B.1.617.2) (7SO9), Omicron_(B.1.529) (7WPA). |
| 10 | 4iuj | - | http://onlinelibrary.wiley.com/doi/10.1002/med.21401/full | The influenza virus polymerase complex: an update on its structure, functions, and significance for antiviral drug design | 2016 | A Stevaert, L Naesens - Medicinal Research Reviews, 2016 - Wiley Online Library | ... Closeup showing a superposition of the crystal structures of the PAC-PB1N interface[223] (PDB: 3CM8) on that of the FluA polymerase (light gray) and the apo form of PAC[224] (light blue; PDB: 4IUJ). ... |