We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ek2 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.22581/full | Structural insights into Staphylococcus aureus enoyl-ACP reductase (FabI), in complex with NADP and triclosan | 2010 | A Priyadarshi, EEK Kim? - Proteins: Structure, Function, and Bioinformatics, 2010 - Wiley Online Library | ... A. aeolicus FabI (PDB ID 2P91) in green, M. tuberculosis FabI (PDB ID 3FNH) in light green, B. napus FabI (PDB ID 1D7O) in cyan, E. coli FabI (PDB ID 2FHS) in pink, P. falciparum FabI (PDB ID 2OP1) in red, B. pseudomallei FabI (PDB ID 3EK2) in orange, and B. anthracis FabI ... |
| 2 | 6mtz | - | https://www.nature.com/articles/s41586-024-08417-6 | Structures and mechanism of condensation in non-ribosomal peptide synthesis | 2025 | A Pistofidis, P Ma, Z Li, K Munro, KN Houk- Nature, 2025 - nature.com | the two parts with protein ligation 15, and solved the structures of the substrate-and product-bound states. The structures show the precise orientation of the megaenzyme preparing ... Initial phases were calculated by molecular replacement in Phaser v.2.9.0 using the full chain A (with domains F1A1T1C2A2T2) of Protein Data Bank (PDB) 6MTZ (ref. 14), followed by iterative refinement in the programs Phenix |
| 3 | 3f9i | - | https://repositories.lib.utexas.edu/handle/2152/74541 | Identifying Novel Inhibitors of RpFabG in Typhus-inducing Rickettsia prowazekii | 2019 | A Panatpur - 2019 - repositories.lib.utexas.edu | The Virtual Cures stream streamlines the aforementioned process by virtually analyzing the structural and chemical bonding relationships a 3-dimensional crystal structure is present for 3-ketoacyl-(acyl-carrier-protein) reductase [ PDB 3F9I ], the available structure has not |
| 4 | 5eqz | - | https://hal.archives-ouvertes.fr/hal-01628162/ | Iterative Decomposition Guided Variable Neighborhood Search for Graphical Model Energy Minimization | 2017 | A Ouali, D Allouche, S De Givry- on Uncertainty in, 2017 - hal.archives-ouvertes.fr | Variable Neighborhood Search (VNS) (Mladenovic and Hansen, 1997) is a metaheuristic that uses a finite set of pre-selected neighborhood structures Nk,k = 1, 2, ..., kmax to escape from local minima by system- atically changing the neighborhood structure if the cur- rent one |
| 5 | 4wny | - | https://www.biorxiv.org/content/10.1101/2020.10.03.324806v1.abstract | A Universal Stress Protein upregulated by hypoxia may contribute to chronic lung colonisation and intramacrophage survival in cystic fibrosis | 2020 | A O'Connor, R Berisio, M Lucey, K Schaffer, S McClean- bioRxiv, 2020 - biorxiv.org | abilities. 253 To identify structural determinants responsible for the different behaviours of USP76 and 254 USP92, in particular their different abilities to bind to epithelial cells, we used homology 255 modelling and analysed resulting structures the best template was the BupsA stress protein from Burkholderia pseudomallei (PDB code 563 4wny, seqid 69.2%). |
| 6 | 4wkw | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.7b00111 | Identification of a Mycothiol-Dependent Nitroreductase from Mycobacterium tuberculosis | 2018 | A Negri, P Javidnia, R Mu, X Zhang- ACS infectious, 2018 - ACS Publications | Compared with published crystal structures of Rv2466c (PDB ID: 4NXI, 4ZIL) and the M. leprae homologue (PDB ID: 4WKW), there were significant conformational changes in one subunit of our structure |
| 7 | 4wi1 | 4olf | https://www.sciencedirect.com/science/article/pii/S1319016418300240 | Inverse docking based screening and identification of protein targets for Cassiarin alkaloids against Plasmodium falciparum | 2018 | A Negi, N Bhandari, BRK Shyamlal- Saudi Pharmaceutical, 2018 - Elsevier | In order, to find the active site on those structure which does not contain co-crystallise ligand, active site finder tool was used to identify the active patches Protein, PDB , Res 4WI1 , 1.65, 1-(4-fluorophenyl)-3-[4-(4-fluorophenyl)-1-methyl-3-(trifluoromethyl)-1H-pyrazol-5-yl]-urea, 0.501 |
| 8 | 4qhq | - | https://link.springer.com/protocol/10.1007/978-1-4939-8736-8_12 | Navigating Among Known Structures in Protein Space | 2019 | A Narunsky, N Ben-Tal, R Kolodny- Computational Methods in Protein, 2019 - Springer | evolutionary history, with sequences that diverged beyond the point where one can identify their common ancestry; for example, the SCOP fold, CATH Architecture , and ECOD As both neighbors ( pdb 4qhq and pdb 3qwl) have a bound methionine in their PDB structure (Fig |
| 9 | 3uam | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15203 | Characterization of a bacterial copperdependent lytic polysaccharide monooxygenase with an unusual second coordination sphere | 2020 | A Munzone, B El Kerdi, M Fanuel- The FEBS, 2020 - Wiley Online Library | by a glycine instead [23,24,26]. Additionally, a crystal structure of a putative AA10 LPMO from Burkholderia pseudomallei with a methionine in place of the alanine was released in the Protein Data Bank ( PDB accession code 3UAM ) |
| 10 | 7m5e | - | https://digital.lib.washington.edu/researchworks/handle/1773/50705 | Development of Automated Methods for Modeling Ligands in Cryo-Electron Microscopy Data | 2023 | A Muenks - 2023 - digital.lib.washington.edu | compared our results to their respective deposited structures and high-resolution crystal crystal structure . For each ligand-protein pair in the EMDB dataset, the PDB was searched for |