We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9O66 | 2025 | 0 |
| 9O68 | 2025 | 0 |
| 9O8J | 2025 | 0 |
| 9O8N | 2025 | 0 |
| 9O90 | 2025 | 0 |
| 9O9R | 2025 | 0 |
| 9OAI | 2025 | 0 |
| 9OAK | 2025 | 0 |
| 9OAN | 2025 | 0 |
| 9OB9 | 2025 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p32 | - | https://ritdml.rit.edu/handle/1850/15250 | Mathematical Modeling and Screening of Ligand Binding Sites in Protein using the Tetrahedral Motif Method and Double-Centroid Representation | 2012 | VM Reyes - 2012 - ritdml.rit.edu | ... unannotated structures in PDB with unknown function to identify possible candidates that might have FMN bound to them. _ + ... Structures from the PDB for Screening using the screening procedure established for the above mathematical model for the binding site.[11] Page 19. ... |
| 2 | 3meq | - | http://www.springerlink.com/index/y386x24r70618558.pdf | Asymmetric reduction of diketones by two Gluconobacter oxydans oxidoreductases | 2012 | P Schweiger, H Gross, J Zeiser? - Applied Microbiology and Biotechnology, 2012 - Springer | ... identity, >70 % similarity) to other alcohol dehydrogenase with known 3-D structure, for example, to zinc-dependent alcohol dehydrogenases from Brucella suis (PDB, 3MEQ_A), Pseudomonas ... 2004), 3MEQ from B. suis, and 1RJW from G. stearthermophilus (Ceccarelli et al. ... |
| 3 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci300196g | Structural insights into the molecular basis of the ligand promiscuity | 2012 | N Sturm, J D?saphy, RJ Quinn, D Rognan? - Journal of Chemical Information and Modeling, 2012 - ACS Publications | ... To this purpose, we exploited the information in the Protein Data Bank (PDB)19 to identify ligands involved in complexes with different proteins. ... MATERIALS AND METHODS Identification in the sc-PDB of promiscuous ligands and their targets ... |
| 4 | 3rqi | - | http://docserv.uni-duesseldorf.de/servlets/DerivateServlet/Derivate-23211/Disser... | Molekulare Charakterisierung der Interaktion der Sensorkinase ETR1 aus Arabidopsis thaliana mit nachgeschalteten Komponenten des Ethylensignalwegs | 2012 | B Scharein - 2012 - docserv.uni-duesseldorf.de | ...Die strukturelle Information für Phospho‐Aspartat stammen aus dem Antwort Regulator Protein aus Burkholderia pseudomallei (pdb‐code 3RQI) ... |
| 5 | 3ek2 | 3k2e, 3grk | http://www.sciencedirect.com/science/article/pii/S096921261200130X | < i> Staphylococcus aureus</i> FabI: Inhibition, Substrate Recognition, and Potential Implications for In Vivo Essentiality | 2012 | J Schiebel, A Chang, H Lu, MV Baxter, PJ Tonge? - Structure, 2012 - Elsevier | ... bacteria harbor an alanine at this position and, thus, lack the required hydrogen bond acceptor (Figure 3). Consistently, all structurally characterized FabIs from gram-negative organisms contain just a single flexible SBL (PDB codes 2JJY, 2P91, 2WYU, 3EK2, 3GRK, and 3K2E ... |
| 6 | 3ek1 | - | http://inderscience.metapress.com/index/F88667Q47093367J.pdf | Conservation of water molecules in protein binding interfaces | 2012 | Z Li, Y He, L Cao, L Wong, J Li - International Journal of Bioinformatics Research and Applications, 2012 - Inderscience | ... Figure 6 Water-contacting structure of four aligned alanine residues in: a rat formyltetrahydrofolate dehydrogenase subunit interface (a, [PDB:2O2P]), and three betaine aldehyde dehydrogenase subunit interfaces (b[PDB:2WOX], c[PDB:1WNB] and d[PDB:3EK1]). ... |
| 7 | 3d53 | 3ome | http://pubs.rsc.org/en/content/articlehtml/2012/mt/c2mt20010d | Identification of two-histidines one-carboxylate binding motifs in proteins amenable to facial coordination to metals | 2012 | M Schmid, G Collet, P Cuniasse, F Gilardoni? - Metallomics, 2012 - pubs.rsc.org | ... 60% sequence similarity are indicated by a * PDB code, Annotated protein function, Carboxylate, Histidine 1, Histidine 2. ... Aminocarboxypropyl-transferase, Glu86*, His193*, His195*. 3D53, Pyrophosphatase, Asp114*, His76*, His77*. ... |
| 8 | 3obk | - | http://pubs.acs.org/doi/abs/10.1021/jp304743c | Catalytic Mechanism of Porphobilinogen Synthase: The Chemical Step Revisited by QM/MM Calculations | 2012 | B Tian, E Erdtman, LA Eriksson - The Journal of Physical Chemistry, 2012 - ACS Publications | ... 2. Computational Details The crystal structures of the yeast PBGS-PBG* intermediate (PDB code 1OHL 7 ) and the Toxoplasma gondii PBGS-PBG complex (PDB code 3OBK 10 ) were obtained from the RCSB Protein Data Bank. Monomers of the two structures were used. ... |
| 9 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24101/full | Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria | 2012 | E Bitto, DJ Kim, CA Bingman, HJ Kim? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... domains of other proteins including glycine cleavage system transcriptional regulator GcvR (PDB id: 1u8s; unpublished data), formyltetrahydrofolate deformylase (PDB id: 3nrb, 3n0v, and 3lou; unpublished data), and phosphoserine phosphatase SerB (PDB id: 3p96).16 The ... |
| 10 | 3js4 | - | http://escholarship.org/uc/item/2t44h65b.pdf | Highly Active Yeast MnSOD has a Novel Mechanism Involving Six-coordinate Mn (3+) Species | 2012 | Y Sheng - 2012 - escholarship.org | ... The enzyme structures of four classes of SOD. (A) Homo sapien CuZnSOD (pdb code: 1PU0); (B) Streptomyces coelicolor NiSOD (pdb code: 1T6U); (C) Saccharomyces cerevisiae MnSOD (pdb code: 3LSU); (D) Anaplasma phagocytophilum FeSOD (pdb code: 3JS4). Page 22. ... |