We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6xmy | - | https://www.nature.com/articles/s41467-023-40928-0 | Protein engineering and iterative multimodule optimization for vitamin B6 production in Escherichia coli | 2023 | L Liu, J Li, Y Gai, Z Tian, Y Wang, T Wang, P Liu- Nature, 2023 - nature.com | docked into the binding pocket according to the crystal structure PDB 1PS6 and PDB 6XMY The crystal structure of PdxJ ( PDB 1M5W) showed that the octameric enzyme possesses |
| 2 | 6tys | - | https://www.nature.com/articles/s41467-023-36995-y | Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein | 2023 | PO Byrne, BE Fisher, DR Ambrozak, EG Blade- Nature, 2023 - nature.com | The initial model for NiV F was PDB ID 6TYS . Homology models for the Fabs were generated using ABodyBuilder 66 . Initial models were docked into the cryo-EM maps using Chimera. |
| 3 | 6tys | 7ki6, 7ki4 | https://www.nature.com/articles/s41467-023-39278-8 | Structure and antigenicity of divergent Henipavirus fusion glycoproteins | 2023 | A Isaacs, YS Low, KL Macauslane, J Seitanidou- Nature, 2023 - nature.com | -EM structures from this work also display clear fusion peptide loop densities, which were only previously seen in structures determined by X-ray crystallography for NiV F ( PDB 5EVM & |
| 4 | 5u26 | - | https://www.sciencedirect.com/science/article/pii/S0223523423003756 | Comprehensive coverage on anti-mycobacterial endeavour reported during 2022 | 2023 | TM Dhameliya, DD Vekariya, HY Patel- European Journal of, 2023 - Elsevier | reported in 2022 with their mechanism of action, structure activity relationships, along with the key Further, molecular docking revealed compound 76 inhibiting DHFR ( PDB : 5U26 ) and |
| 5 | 6n38 | - | https://www.sciencedirect.com/science/article/pii/S0022283622005447 | Coevolution-Guided Mapping of the Type VI Secretion Membrane Complex-Baseplate Interface | 2023 | E Vanliolu, YG Santin, I Filella-Merce- Journal of Molecular, 2023 - Elsevier | the EAEC T6SS wedge complex structure 10 as a benchmark in a The known structure of the wedge complex ( PDB : 6N38 ) was AlphaFold2 structural models were generated using the |
| 6 | 6n1f | - | https://journals.asm.org/doi/abs/10.1128/mbio.00408-23 | Exaptation of Inactivated Host Enzymes for Structural Roles in Orthopoxviruses and Novel Folds of Virus Proteins Revealed by Protein Structure Modeling | 2023 | P Mutz, W Resch, G Faure, TG Senkevich, EV Koonin- Mbio, 2023 - Am Soc Microbiol | Given that all of the models in this work were compared both to the PDB and to the large database of AlphaFold2 ... OPG20 (C10L), OPG31 (C4L), and OPG165 (A37R) are homologs of hydroxylases.... the 2OG-Fe(II) Oxygenase family of Burkholderia pseudomallei (6n1f |
| 7 | 6ml8 | - | https://www.nature.com/articles/s42003-023-04793-3 | Structural insights into the broad protection against H1 influenza viruses by a computationally optimized hemagglutinin vaccine | 2023 | JV Dzimianski, J Han, GA Sautto, SM O'Rourke- Communications, 2023 - nature.com | a Closeup of Asn127 of COBRA P1 overlayed with structures of CA/04/09 ( PDB 3LZG) and DV/1/57 bound to the RBS-targeting antibody C05 ( PDB 6ML8 ). b Biolayer interferometry of |
| 8 | 5br9 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26545 | Protein target highlights in CASP15: Analysis of models by structure providers | 2023 | LT Alexander, J Durairaj- Proteins: Structure, 2023 - Wiley Online Library | structures superimposed on Ferrichrome-bound FhuA ( PDB ( PDB 1QFG, salmon) and FhuA from the target ( PDB 8B14, Red star: first resolved N-terminus of the different structures ... Structure of A. aeolicus TsaB. (A) The overlaid crystal structures of E. coli TsaB (PDB: 4YDU), T. maritima TsaB (PDB: 6N9A), S. typhimurium TsaB (PDB: 3ZET), P. s aeruginosa (PDB: 5BR9) |
| 9 | 7sh3 | - | https://www.nature.com/articles/s42004-023-01029-7 | Peptide binder design with inverse folding and protein structure prediction | 2023 | P Bryant, A Elofsson- Communications Chemistry, 2023 - nature.com | ProteinMPNN was trained on assemblies in the PDB these to unique PDB IDS, one finds 4086 PDB IDS in total. from all PDB IDs and extracted interacting pairs (one per PDB ID) based ... To see if the modification of the AF protocol described here can distinguish these binders, we analyse sequences tested against four different receptor proteins with solved receptor-binder structures ... IL7Ra: https://www.rcsb.org/structure/7OPB and VirB8:https://www.rcsb.org/structure/7SH3). |
| 10 | 6tz8 | - | https://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1011056 | Natural product ligands of FKBP12: Immunosuppressive antifungal agents FK506, rapamycin, and beyond | 2023 | A Rivera, J Heitman- PLoS pathogens, 2023 - journals.plos.org | adapted from Harnessing calcineurin-FK506-FKBP12 crystal structures from invasive fungal pathogens to develop antifungal agents ( PDB 6TZ8 ) [3]. The original figure was published |